From 8630e29d1a7feabb742171cdd7c4c3e02c976168 Mon Sep 17 00:00:00 2001
From: 1uc <luc.grosheintz@gmail.com>
Date: Wed, 13 Nov 2024 13:08:27 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20BlueBrai?=
 =?UTF-8?q?n/nmodl@16b5f956c3a1bea0a9234b31be74cd86c471f075=20=F0=9F=9A=80?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .doctrees/environment.pickle                  | Bin 159128 -> 159226 bytes
 .../notebooks/nmodl-kinetic-schemes.ipynb     |  56 +++---
 .../notebooks/nmodl-python-tutorial.ipynb     | 160 +++++++++---------
 .../notebooks/nmodl-sympy-conductance.ipynb   |  72 ++++----
 .../notebooks/nmodl-sympy-solver-cnexp.ipynb  |  64 +++----
 .../nmodl-sympy-solver-derivimplicit.ipynb    |  32 ++--
 .../notebooks/nmodl-sympy-solver-sparse.ipynb |  32 ++--
 _modules/nmodl/ode.html                       |   6 +-
 notebooks/nmodl-kinetic-schemes.ipynb         |  56 +++---
 notebooks/nmodl-python-tutorial.ipynb         | 160 +++++++++---------
 notebooks/nmodl-sympy-conductance.ipynb       |  72 ++++----
 notebooks/nmodl-sympy-solver-cnexp.ipynb      |  64 +++----
 .../nmodl-sympy-solver-derivimplicit.ipynb    |  32 ++--
 notebooks/nmodl-sympy-solver-sparse.ipynb     |  32 ++--
 14 files changed, 421 insertions(+), 417 deletions(-)

diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
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diff --git a/.doctrees/nbsphinx/notebooks/nmodl-kinetic-schemes.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-kinetic-schemes.ipynb
index f79cea2f6..73c6fcc88 100644
--- a/.doctrees/nbsphinx/notebooks/nmodl-kinetic-schemes.ipynb
+++ b/.doctrees/nbsphinx/notebooks/nmodl-kinetic-schemes.ipynb
@@ -152,10 +152,10 @@
    "execution_count": 1,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-11-13T09:18:41.751865Z",
-     "iopub.status.busy": "2024-11-13T09:18:41.751669Z",
-     "iopub.status.idle": "2024-11-13T09:18:42.552471Z",
-     "shell.execute_reply": "2024-11-13T09:18:42.551594Z"
+     "iopub.execute_input": "2024-11-13T13:07:43.920864Z",
+     "iopub.status.busy": "2024-11-13T13:07:43.920665Z",
+     "iopub.status.idle": "2024-11-13T13:07:44.734780Z",
+     "shell.execute_reply": "2024-11-13T13:07:44.733949Z"
     }
    },
    "outputs": [],
@@ -169,10 +169,10 @@
    "execution_count": 2,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-11-13T09:18:42.555059Z",
-     "iopub.status.busy": "2024-11-13T09:18:42.554826Z",
-     "iopub.status.idle": "2024-11-13T09:18:42.585239Z",
-     "shell.execute_reply": "2024-11-13T09:18:42.584620Z"
+     "iopub.execute_input": "2024-11-13T13:07:44.737519Z",
+     "iopub.status.busy": "2024-11-13T13:07:44.737108Z",
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+     "shell.execute_reply": "2024-11-13T13:07:44.767814Z"
     }
    },
    "outputs": [],
@@ -277,10 +277,10 @@
    "execution_count": 3,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-11-13T09:18:42.587474Z",
-     "iopub.status.busy": "2024-11-13T09:18:42.587081Z",
-     "iopub.status.idle": "2024-11-13T09:18:42.592054Z",
-     "shell.execute_reply": "2024-11-13T09:18:42.591383Z"
+     "iopub.execute_input": "2024-11-13T13:07:44.771054Z",
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+     "shell.execute_reply": "2024-11-13T13:07:44.775006Z"
     }
    },
    "outputs": [
@@ -323,10 +323,10 @@
    "execution_count": 4,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-11-13T09:18:42.622326Z",
-     "iopub.status.busy": "2024-11-13T09:18:42.622107Z",
-     "iopub.status.idle": "2024-11-13T09:18:42.626206Z",
-     "shell.execute_reply": "2024-11-13T09:18:42.625636Z"
+     "iopub.execute_input": "2024-11-13T13:07:44.808094Z",
+     "iopub.status.busy": "2024-11-13T13:07:44.807599Z",
+     "iopub.status.idle": "2024-11-13T13:07:44.811888Z",
+     "shell.execute_reply": "2024-11-13T13:07:44.811315Z"
     }
    },
    "outputs": [
@@ -367,10 +367,10 @@
    "execution_count": 5,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-11-13T09:18:42.628010Z",
-     "iopub.status.busy": "2024-11-13T09:18:42.627818Z",
-     "iopub.status.idle": "2024-11-13T09:18:42.631599Z",
-     "shell.execute_reply": "2024-11-13T09:18:42.631040Z"
+     "iopub.execute_input": "2024-11-13T13:07:44.813884Z",
+     "iopub.status.busy": "2024-11-13T13:07:44.813515Z",
+     "iopub.status.idle": "2024-11-13T13:07:44.816876Z",
+     "shell.execute_reply": "2024-11-13T13:07:44.816297Z"
     },
     "scrolled": true
    },
@@ -412,10 +412,10 @@
    "execution_count": 6,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-11-13T09:18:42.633619Z",
-     "iopub.status.busy": "2024-11-13T09:18:42.633307Z",
-     "iopub.status.idle": "2024-11-13T09:18:42.637224Z",
-     "shell.execute_reply": "2024-11-13T09:18:42.636683Z"
+     "iopub.execute_input": "2024-11-13T13:07:44.819054Z",
+     "iopub.status.busy": "2024-11-13T13:07:44.818570Z",
+     "iopub.status.idle": "2024-11-13T13:07:44.822537Z",
+     "shell.execute_reply": "2024-11-13T13:07:44.821970Z"
     },
     "scrolled": true
    },
@@ -459,10 +459,10 @@
    "execution_count": 7,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-11-13T09:18:42.639023Z",
-     "iopub.status.busy": "2024-11-13T09:18:42.638832Z",
-     "iopub.status.idle": "2024-11-13T09:18:42.642960Z",
-     "shell.execute_reply": "2024-11-13T09:18:42.642422Z"
+     "iopub.execute_input": "2024-11-13T13:07:44.824577Z",
+     "iopub.status.busy": "2024-11-13T13:07:44.824197Z",
+     "iopub.status.idle": "2024-11-13T13:07:44.828705Z",
+     "shell.execute_reply": "2024-11-13T13:07:44.828084Z"
     }
    },
    "outputs": [
diff --git a/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb
index 6a2a6b282..45c9cb80c 100644
--- a/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb
+++ b/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb
@@ -30,10 +30,10 @@
    "execution_count": 1,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-11-13T09:18:51.442230Z",
-     "iopub.status.busy": "2024-11-13T09:18:51.442046Z",
-     "iopub.status.idle": "2024-11-13T09:18:52.242528Z",
-     "shell.execute_reply": "2024-11-13T09:18:52.241721Z"
+     "iopub.execute_input": "2024-11-13T13:07:50.046317Z",
+     "iopub.status.busy": "2024-11-13T13:07:50.046117Z",
+     "iopub.status.idle": "2024-11-13T13:07:50.841889Z",
+     "shell.execute_reply": "2024-11-13T13:07:50.840964Z"
     }
    },
    "outputs": [],
@@ -63,10 +63,10 @@
    "execution_count": 2,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-11-13T09:18:52.245184Z",
-     "iopub.status.busy": "2024-11-13T09:18:52.244737Z",
-     "iopub.status.idle": "2024-11-13T09:18:52.273465Z",
-     "shell.execute_reply": "2024-11-13T09:18:52.272720Z"
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@@ -86,10 +86,10 @@
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@@ -152,10 +152,10 @@
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@@ -183,10 +183,10 @@
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@@ -235,10 +235,10 @@
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@@ -260,10 +260,10 @@
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@@ -297,10 +297,10 @@
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@@ -365,10 +365,10 @@
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@@ -416,10 +416,10 @@
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@@ -441,10 +441,10 @@
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@@ -510,10 +510,10 @@
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@@ -548,10 +548,10 @@
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@@ -584,10 +584,10 @@
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@@ -622,10 +622,10 @@
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@@ -669,10 +669,10 @@
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@@ -733,10 +733,10 @@
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@@ -761,10 +761,10 @@
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@@ -857,10 +857,10 @@
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    "outputs": [
@@ -897,10 +897,10 @@
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    "outputs": [
diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb
index 07256374c..c2da9425b 100644
--- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb
+++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb
@@ -86,10 +86,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:55.627591Z"
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@@ -103,10 +103,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:55.660609Z"
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@@ -149,10 +149,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:55.939359Z"
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@@ -196,10 +196,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:56.073233Z"
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    "outputs": [
@@ -243,10 +243,10 @@
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@@ -290,10 +290,10 @@
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@@ -337,10 +337,10 @@
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@@ -400,10 +400,10 @@
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@@ -456,10 +456,10 @@
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diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb
index f3992f265..b62aadb08 100644
--- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb
+++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb
@@ -62,10 +62,10 @@
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@@ -79,10 +79,10 @@
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@@ -165,10 +165,10 @@
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@@ -207,10 +207,10 @@
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@@ -303,10 +303,10 @@
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@@ -351,10 +351,10 @@
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diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb
index 45ad8cc3e..299290915 100644
--- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb
+++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb
@@ -39,10 +39,10 @@
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@@ -56,10 +56,10 @@
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diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb
index 44a1a36dc..1a23c1116 100644
--- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb
+++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb
@@ -39,10 +39,10 @@
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@@ -56,10 +56,10 @@
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@@ -165,10 +165,10 @@
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diff --git a/_modules/nmodl/ode.html b/_modules/nmodl/ode.html
index ee966db95..0b70d45be 100644
--- a/_modules/nmodl/ode.html
+++ b/_modules/nmodl/ode.html
@@ -479,7 +479,11 @@ <h1>Source code for nmodl.ode</h1><div class="highlight"><pre>
     <span class="k">if</span> <span class="ow">not</span> <span class="n">expr</span><span class="o">.</span><span class="n">args</span><span class="p">:</span>
         <span class="k">return</span> <span class="n">expr</span>
 
-    <span class="n">args</span> <span class="o">=</span> <span class="p">(</span><span class="n">transform_expression</span><span class="p">(</span><span class="n">transform</span><span class="p">(</span><span class="n">arg</span><span class="p">),</span> <span class="n">transform</span><span class="p">)</span> <span class="k">for</span> <span class="n">arg</span> <span class="ow">in</span> <span class="n">expr</span><span class="o">.</span><span class="n">args</span><span class="p">)</span>
+    <span class="n">transformed_expr</span> <span class="o">=</span> <span class="n">transform</span><span class="p">(</span><span class="n">expr</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">transformed_expr</span> <span class="ow">is</span> <span class="ow">not</span> <span class="n">expr</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">transformed_expr</span>
+
+    <span class="n">args</span> <span class="o">=</span> <span class="p">(</span><span class="n">transform_expression</span><span class="p">(</span><span class="n">arg</span><span class="p">,</span> <span class="n">transform</span><span class="p">)</span> <span class="k">for</span> <span class="n">arg</span> <span class="ow">in</span> <span class="n">expr</span><span class="o">.</span><span class="n">args</span><span class="p">)</span>
     <span class="k">return</span> <span class="n">expr</span><span class="o">.</span><span class="n">func</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span></div>
 
 
diff --git a/notebooks/nmodl-kinetic-schemes.ipynb b/notebooks/nmodl-kinetic-schemes.ipynb
index f79cea2f6..73c6fcc88 100644
--- a/notebooks/nmodl-kinetic-schemes.ipynb
+++ b/notebooks/nmodl-kinetic-schemes.ipynb
@@ -152,10 +152,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:42.551594Z"
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+     "shell.execute_reply": "2024-11-13T13:07:44.733949Z"
     }
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@@ -169,10 +169,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:42.584620Z"
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     }
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@@ -277,10 +277,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:42.591383Z"
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     }
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@@ -323,10 +323,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:42.625636Z"
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     }
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@@ -367,10 +367,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:42.631040Z"
+     "iopub.execute_input": "2024-11-13T13:07:44.813884Z",
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     },
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@@ -412,10 +412,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:42.636683Z"
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@@ -459,10 +459,10 @@
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diff --git a/notebooks/nmodl-python-tutorial.ipynb b/notebooks/nmodl-python-tutorial.ipynb
index 6a2a6b282..45c9cb80c 100644
--- a/notebooks/nmodl-python-tutorial.ipynb
+++ b/notebooks/nmodl-python-tutorial.ipynb
@@ -30,10 +30,10 @@
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@@ -63,10 +63,10 @@
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@@ -86,10 +86,10 @@
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@@ -152,10 +152,10 @@
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@@ -183,10 +183,10 @@
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@@ -235,10 +235,10 @@
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@@ -260,10 +260,10 @@
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@@ -297,10 +297,10 @@
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@@ -365,10 +365,10 @@
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@@ -416,10 +416,10 @@
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@@ -441,10 +441,10 @@
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@@ -510,10 +510,10 @@
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@@ -548,10 +548,10 @@
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@@ -584,10 +584,10 @@
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@@ -622,10 +622,10 @@
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@@ -669,10 +669,10 @@
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@@ -733,10 +733,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:52.359616Z"
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@@ -761,10 +761,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:52.371275Z"
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@@ -857,10 +857,10 @@
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    "outputs": [
@@ -897,10 +897,10 @@
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    "outputs": [
diff --git a/notebooks/nmodl-sympy-conductance.ipynb b/notebooks/nmodl-sympy-conductance.ipynb
index 07256374c..c2da9425b 100644
--- a/notebooks/nmodl-sympy-conductance.ipynb
+++ b/notebooks/nmodl-sympy-conductance.ipynb
@@ -86,10 +86,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:55.627591Z"
+     "iopub.execute_input": "2024-11-13T13:07:53.273254Z",
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    "outputs": [],
@@ -103,10 +103,10 @@
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-     "iopub.status.idle": "2024-11-13T09:18:55.661290Z",
-     "shell.execute_reply": "2024-11-13T09:18:55.660609Z"
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    "outputs": [],
@@ -149,10 +149,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:55.939359Z"
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    "outputs": [
@@ -196,10 +196,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:56.073233Z"
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    "outputs": [
@@ -243,10 +243,10 @@
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-     "shell.execute_reply": "2024-11-13T09:18:56.084492Z"
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    "outputs": [
@@ -290,10 +290,10 @@
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@@ -337,10 +337,10 @@
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@@ -400,10 +400,10 @@
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@@ -456,10 +456,10 @@
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diff --git a/notebooks/nmodl-sympy-solver-cnexp.ipynb b/notebooks/nmodl-sympy-solver-cnexp.ipynb
index f3992f265..b62aadb08 100644
--- a/notebooks/nmodl-sympy-solver-cnexp.ipynb
+++ b/notebooks/nmodl-sympy-solver-cnexp.ipynb
@@ -62,10 +62,10 @@
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@@ -79,10 +79,10 @@
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@@ -123,10 +123,10 @@
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@@ -165,10 +165,10 @@
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@@ -207,10 +207,10 @@
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@@ -255,10 +255,10 @@
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@@ -303,10 +303,10 @@
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@@ -351,10 +351,10 @@
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diff --git a/notebooks/nmodl-sympy-solver-derivimplicit.ipynb b/notebooks/nmodl-sympy-solver-derivimplicit.ipynb
index 45ad8cc3e..299290915 100644
--- a/notebooks/nmodl-sympy-solver-derivimplicit.ipynb
+++ b/notebooks/nmodl-sympy-solver-derivimplicit.ipynb
@@ -39,10 +39,10 @@
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@@ -56,10 +56,10 @@
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@@ -100,10 +100,10 @@
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@@ -165,10 +165,10 @@
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diff --git a/notebooks/nmodl-sympy-solver-sparse.ipynb b/notebooks/nmodl-sympy-solver-sparse.ipynb
index 44a1a36dc..1a23c1116 100644
--- a/notebooks/nmodl-sympy-solver-sparse.ipynb
+++ b/notebooks/nmodl-sympy-solver-sparse.ipynb
@@ -39,10 +39,10 @@
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@@ -56,10 +56,10 @@
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@@ -100,10 +100,10 @@
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@@ -165,10 +165,10 @@
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    "outputs": [