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ze76RB7-Va(pTQvw4l_8a!7&CWHTZ-m(sVgC5*62mG#`4&7I|Igu~ z%`kh2b^*=h{coWGzVLeXExuf-l3vx&wp*<_d=;I@Gt7qOdjFor+1>gdYvS@F9V6hSBS=y@@BrXNCeMvqF)+*AK7sws9=D%)OzaY5AoYJP!> z<|2Evg`!9OqoG{|4fTkIx6OAd8)>V*mB$-yI> kTBx^~=4P_jdT8E)8YJOQzUVh){`lJ-OQIzyX}position_of_int_var(const std::string &name) const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual print_atomic_reduction_pragma() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual print_backend_info()nmodl::codegen::CodegenCppVisitorprotected - print_check_table_function_prototypes()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_codegen_routines() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_compute_functions() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_data_structures(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_eigen_linear_solver(const std::string &float_type, int N)nmodl::codegen::CodegenCppVisitorprotected - print_fast_imem_calculation() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_function(const ast::FunctionBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_function_call(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})nmodl::codegen::CodegenCppVisitor - print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers={ CppObjectSpecifier::Inline}) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_function_procedure_helper(const ast::Block &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_function_prototypes() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_functor_definition(const ast::EigenNewtonSolverBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_functors_definitions()nmodl::codegen::CodegenCppVisitorprotected - print_g_unused() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_global_function_common_code(BlockType type, const std::string &function_name="") overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_global_macros()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_global_param_default_values()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_global_var_struct_assertions() constnmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_var_struct_decl()nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_variables_for_hoc() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_headers_include() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_hoc_py_wrapper_function_body(const ast::Block *function_or_procedure_block, InterpreterWrapper wrapper_type)nmodl::codegen::CodegenNeuronCppVisitorprotected - print_hoc_py_wrapper_function_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_initial_block(const ast::InitialBlock *node)nmodl::codegen::CodegenNeuronCppVisitorprotected - print_ion_variable() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_macro_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_make_instance() constnmodl::codegen::CodegenNeuronCppVisitorprotected - print_make_node_data() constnmodl::codegen::CodegenNeuronCppVisitorprotected - print_mechanism_global_var_structure(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_mechanism_info()nmodl::codegen::CodegenCppVisitorprotected - print_mechanism_range_var_structure(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorvirtual - print_mechanism_register() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_mechanism_variables_macros()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_namespace_start()nmodl::codegen::CodegenCppVisitorprotected - print_namespace_stop()nmodl::codegen::CodegenCppVisitorprotected - print_net_event_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_net_move_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_net_receive()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_net_receive_registration()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_net_send_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_neuron_global_variable_declarations()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_neuron_includes()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_nmodl_constants()nmodl::codegen::CodegenCppVisitorprotected - print_node_data_structure(bool print_initializers)nmodl::codegen::CodegenNeuronCppVisitor - print_nrn_alloc() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_constructor() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_cur() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_cur_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_cur_non_conductance_kernel() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_current(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_destructor() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_init(bool skip_init_check=true)nmodl::codegen::CodegenNeuronCppVisitorprotected - print_nrn_jacob()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_nrn_state() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_point_process_function_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_prcellstate_macros() constnmodl::codegen::CodegenCppVisitorprotected - print_procedure(const ast::ProcedureBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_rename_state_vars() constnmodl::codegen::CodegenCppVisitor - print_sdlists_init(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_setdata_functions()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_standard_includes() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_statement_block(const ast::StatementBlock &node, bool open_brace=true, bool close_brace=true)nmodl::codegen::CodegenCppVisitorprotected - print_table_check_function(const ast::Block &)nmodl::codegen::CodegenCppVisitor - print_table_replacement_function(const ast::Block &)nmodl::codegen::CodegenCppVisitor - print_thread_memory_callbacks()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_thread_variables_structure(bool print_initializers)nmodl::codegen::CodegenNeuronCppVisitor - print_using_namespace()nmodl::codegen::CodegenCppVisitorprotected - print_v_unused() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_vector_elements(const std::vector< T > &elements, const std::string &separator, const std::string &prefix="")nmodl::codegen::CodegenCppVisitorprotected - printernmodl::codegen::CodegenCppVisitorprotected - printing_net_initnmodl::codegen::CodegenCppVisitorprotected - printing_net_receivenmodl::codegen::CodegenCppVisitorprotected - printing_top_verbatim_blocksnmodl::codegen::CodegenCppVisitorprotected - process_shadow_update_statement(const ShadowUseStatement &statement, BlockType type)nmodl::codegen::CodegenCppVisitorprotected - process_verbatim_text(std::string const &text) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - program_symtabnmodl::codegen::CodegenCppVisitorprotected - py_function_name(const std::string &function_or_procedure_name) constnmodl::codegen::CodegenNeuronCppVisitorprotected - py_function_signature(const std::string &function_or_procedure_name) constnmodl::codegen::CodegenNeuronCppVisitorprotected - range_variable_setup_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - read_ion_variable_name(const std::string &name)nmodl::codegen::CodegenCppVisitorprotectedstatic - register_mechanism_arguments() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - setup(const ast::Program &node)nmodl::codegen::CodegenCppVisitor - simulator_name() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - statement_to_skip(const ast::Statement &node)nmodl::codegen::CodegenCppVisitorprotectedstatic - SymbolType typedefnmodl::codegen::CodegenCppVisitorprotected - table_thread_function_name() constnmodl::codegen::CodegenNeuronCppVisitorprotected - table_update_function_name(const std::string &block_name) constnmodl::codegen::CodegenCppVisitorprotected - thread_variable_name(const ThreadVariableInfo &var_info, bool use_instance=true) constnmodl::codegen::CodegenNeuronCppVisitorprotected - thread_variables_struct() constnmodl::codegen::CodegenCppVisitorinlineprotected - update_if_ion_variable_name(const std::string &name) constnmodl::codegen::CodegenCppVisitorprotected - update_index_semantics()nmodl::codegen::CodegenCppVisitorprotected - visit_after_block(const ast::AfterBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_argument(const ast::Argument &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_assigned_block(const ast::AssignedBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_assigned_definition(const ast::AssignedDefinition &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_ba_block(const ast::BABlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_ba_block_type(const ast::BABlockType &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_bbcore_pointer(const ast::BbcorePointer &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_bbcore_pointer_var(const ast::BbcorePointerVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_before_block(const ast::BeforeBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_binary_expression(const ast::BinaryExpression &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_binary_operator(const ast::BinaryOperator &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_block(const ast::Block &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_block_comment(const ast::BlockComment &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_boolean(const ast::Boolean &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_breakpoint_block(const ast::BreakpointBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_compartment(const ast::Compartment &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_conductance_hint(const ast::ConductanceHint &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_conserve(const ast::Conserve &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_constant_block(const ast::ConstantBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_constant_statement(const ast::ConstantStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_constant_var(const ast::ConstantVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_constructor_block(const ast::ConstructorBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_define(const ast::Define &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_derivative_block(const ast::DerivativeBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_derivimplicit_callback(const ast::DerivimplicitCallback &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_destructor_block(const ast::DestructorBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_diff_eq_expression(const ast::DiffEqExpression &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_discrete_block(const ast::DiscreteBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_double(const ast::Double &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_double_unit(const ast::DoubleUnit &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_eigen_linear_solver_block(const ast::EigenLinearSolverBlock &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_eigen_newton_solver_block(const ast::EigenNewtonSolverBlock &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_electrode_cur_var(const ast::ElectrodeCurVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_electrode_current(const ast::ElectrodeCurrent &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_else_if_statement(const ast::ElseIfStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_else_statement(const ast::ElseStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_expression(const ast::Expression &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_expression_statement(const ast::ExpressionStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_extern_var(const ast::ExternVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_external(const ast::External &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_factor_def(const ast::FactorDef &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_float(const ast::Float &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_for_netcon(const ast::ForNetcon &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_from_statement(const ast::FromStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_function_block(const ast::FunctionBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_function_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_function_table_block(const ast::FunctionTableBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_global(const ast::Global &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_global_var(const ast::GlobalVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_identifier(const ast::Identifier &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_if_statement(const ast::IfStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_include(const ast::Include &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_independent_block(const ast::IndependentBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_indexed_name(const ast::IndexedName &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_initial_block(const ast::InitialBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_integer(const ast::Integer &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_kinetic_block(const ast::KineticBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_lag_statement(const ast::LagStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_limits(const ast::Limits &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_lin_equation(const ast::LinEquation &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_line_comment(const ast::LineComment &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_linear_block(const ast::LinearBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_local_list_statement(const ast::LocalListStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_local_var(const ast::LocalVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_lon_difuse(const ast::LonDifuse &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_model(const ast::Model &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_mutex_lock(const ast::MutexLock &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_mutex_unlock(const ast::MutexUnlock &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_name(const ast::Name &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_net_receive_block(const ast::NetReceiveBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_neuron_block(const ast::NeuronBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_node(const ast::Node &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_non_lin_equation(const ast::NonLinEquation &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_non_linear_block(const ast::NonLinearBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_nonspecific(const ast::Nonspecific &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_nonspecific_cur_var(const ast::NonspecificCurVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_nrn_state_block(const ast::NrnStateBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_number(const ast::Number &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_number_range(const ast::NumberRange &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_ontology_statement(const ast::OntologyStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_param_assign(const ast::ParamAssign &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_param_block(const ast::ParamBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_paren_expression(const ast::ParenExpression &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_pointer(const ast::Pointer &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_pointer_var(const ast::PointerVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_prime_name(const ast::PrimeName &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_procedure_block(const ast::ProcedureBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_program(const ast::Program &program) overridenmodl::codegen::CodegenCppVisitorvirtual - visit_protect_statement(const ast::ProtectStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_random_var(const ast::RandomVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_random_var_list(const ast::RandomVarList &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_range(const ast::Range &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_range_var(const ast::RangeVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_react_var_name(const ast::ReactVarName &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_reaction_operator(const ast::ReactionOperator &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_reaction_statement(const ast::ReactionStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_read_ion_var(const ast::ReadIonVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_solution_expression(const ast::SolutionExpression &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_solve_block(const ast::SolveBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_state_block(const ast::StateBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_statement(const ast::Statement &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_statement_block(const ast::StatementBlock &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_string(const ast::String &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_suffix(const ast::Suffix &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_table_statement(const ast::TableStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_thread_safe(const ast::ThreadSafe &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_unary_expression(const ast::UnaryExpression &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_unary_operator(const ast::UnaryOperator &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_unit(const ast::Unit &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_unit_block(const ast::UnitBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_unit_def(const ast::UnitDef &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_unit_state(const ast::UnitState &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_update_dt(const ast::UpdateDt &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_useion(const ast::Useion &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_valence(const ast::Valence &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_var_name(const ast::VarName &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_verbatim(const ast::Verbatim &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_watch(const ast::Watch &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_watch_statement(const ast::WatchStatement &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - visit_while_statement(const ast::WhileStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual - visit_wrapped_expression(const ast::WrappedExpression &node) overridenmodl::visitor::ConstAstVisitorvirtual - visit_write_ion_var(const ast::WriteIonVar &node) overridenmodl::visitor::ConstAstVisitorvirtual - write_ion_variable_name(const std::string &name)nmodl::codegen::CodegenCppVisitorprotectedstatic - ~ConstVisitor()=defaultnmodl::visitor::ConstVisitorvirtual + print_callable_preamble_from_prop()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_check_table_function_prototypes()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_codegen_routines() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_compute_functions() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_data_structures(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_eigen_linear_solver(const std::string &float_type, int N)nmodl::codegen::CodegenCppVisitorprotected + print_fast_imem_calculation() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_function(const ast::FunctionBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_function_call(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})nmodl::codegen::CodegenCppVisitor + print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers={ CppObjectSpecifier::Inline}) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_function_procedure_helper(const ast::Block &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_function_prototypes() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_functor_definition(const ast::EigenNewtonSolverBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_functors_definitions()nmodl::codegen::CodegenCppVisitorprotected + print_g_unused() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_global_function_common_code(BlockType type, const std::string &function_name="") overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_global_macros()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_global_param_default_values()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_global_var_struct_assertions() constnmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_var_struct_decl()nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_variables_for_hoc() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_headers_include() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_hoc_py_wrapper_function_body(const ast::Block *function_or_procedure_block, InterpreterWrapper wrapper_type)nmodl::codegen::CodegenNeuronCppVisitorprotected + print_hoc_py_wrapper_function_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_initial_block(const ast::InitialBlock *node)nmodl::codegen::CodegenNeuronCppVisitorprotected + print_ion_variable() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_macro_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_make_instance() constnmodl::codegen::CodegenNeuronCppVisitorprotected + print_make_node_data() constnmodl::codegen::CodegenNeuronCppVisitorprotected + print_mechanism_global_var_structure(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_mechanism_info()nmodl::codegen::CodegenCppVisitorprotected + print_mechanism_range_var_structure(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorvirtual + print_mechanism_register() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_mechanism_variables_macros()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_namespace_start()nmodl::codegen::CodegenCppVisitorprotected + print_namespace_stop()nmodl::codegen::CodegenCppVisitorprotected + print_net_event_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_net_move_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_net_receive()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_net_receive_registration()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_net_send_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_neuron_global_variable_declarations()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_neuron_includes()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_nmodl_constants()nmodl::codegen::CodegenCppVisitorprotected + print_node_data_structure(bool print_initializers)nmodl::codegen::CodegenNeuronCppVisitor + print_nrn_alloc() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_constructor() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_cur() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_cur_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_cur_non_conductance_kernel() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_current(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_destructor() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_init(bool skip_init_check=true)nmodl::codegen::CodegenNeuronCppVisitorprotected + print_nrn_jacob()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_nrn_state() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_point_process_function_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_prcellstate_macros() constnmodl::codegen::CodegenCppVisitorprotected + print_procedure(const ast::ProcedureBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_rename_state_vars() constnmodl::codegen::CodegenCppVisitor + print_sdlists_init(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_setdata_functions()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_standard_includes() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_statement_block(const ast::StatementBlock &node, bool open_brace=true, bool close_brace=true)nmodl::codegen::CodegenCppVisitorprotected + print_table_check_function(const ast::Block &)nmodl::codegen::CodegenCppVisitor + print_table_replacement_function(const ast::Block &)nmodl::codegen::CodegenCppVisitor + print_thread_memory_callbacks()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_thread_variables_structure(bool print_initializers)nmodl::codegen::CodegenNeuronCppVisitor + print_using_namespace()nmodl::codegen::CodegenCppVisitorprotected + print_v_unused() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_vector_elements(const std::vector< T > &elements, const std::string &separator, const std::string &prefix="")nmodl::codegen::CodegenCppVisitorprotected + printernmodl::codegen::CodegenCppVisitorprotected + printing_net_initnmodl::codegen::CodegenCppVisitorprotected + printing_net_receivenmodl::codegen::CodegenCppVisitorprotected + printing_top_verbatim_blocksnmodl::codegen::CodegenCppVisitorprotected + process_shadow_update_statement(const ShadowUseStatement &statement, BlockType type)nmodl::codegen::CodegenCppVisitorprotected + process_verbatim_text(std::string const &text) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + program_symtabnmodl::codegen::CodegenCppVisitorprotected + py_function_name(const std::string &function_or_procedure_name) constnmodl::codegen::CodegenNeuronCppVisitorprotected + py_function_signature(const std::string &function_or_procedure_name) constnmodl::codegen::CodegenNeuronCppVisitorprotected + range_variable_setup_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + read_ion_variable_name(const std::string &name)nmodl::codegen::CodegenCppVisitorprotectedstatic + register_mechanism_arguments() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + setup(const ast::Program &node)nmodl::codegen::CodegenCppVisitor + simulator_name() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + statement_to_skip(const ast::Statement &node)nmodl::codegen::CodegenCppVisitorprotectedstatic + SymbolType typedefnmodl::codegen::CodegenCppVisitorprotected + table_thread_function_name() constnmodl::codegen::CodegenNeuronCppVisitorprotected + table_update_function_name(const std::string &block_name) constnmodl::codegen::CodegenCppVisitorprotected + thread_variable_name(const ThreadVariableInfo &var_info, bool use_instance=true) constnmodl::codegen::CodegenNeuronCppVisitorprotected + thread_variables_struct() constnmodl::codegen::CodegenCppVisitorinlineprotected + update_if_ion_variable_name(const std::string &name) constnmodl::codegen::CodegenCppVisitorprotected + update_index_semantics()nmodl::codegen::CodegenCppVisitorprotected + visit_after_block(const ast::AfterBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_argument(const ast::Argument &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_assigned_block(const ast::AssignedBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_assigned_definition(const ast::AssignedDefinition &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_ba_block(const ast::BABlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_ba_block_type(const ast::BABlockType &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_bbcore_pointer(const ast::BbcorePointer &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_bbcore_pointer_var(const ast::BbcorePointerVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_before_block(const ast::BeforeBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_binary_expression(const ast::BinaryExpression &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_binary_operator(const ast::BinaryOperator &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_block(const ast::Block &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_block_comment(const ast::BlockComment &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_boolean(const ast::Boolean &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_breakpoint_block(const ast::BreakpointBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_compartment(const ast::Compartment &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_conductance_hint(const ast::ConductanceHint &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_conserve(const ast::Conserve &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_constant_block(const ast::ConstantBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_constant_statement(const ast::ConstantStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_constant_var(const ast::ConstantVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_constructor_block(const ast::ConstructorBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_define(const ast::Define &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_derivative_block(const ast::DerivativeBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_derivimplicit_callback(const ast::DerivimplicitCallback &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_destructor_block(const ast::DestructorBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_diff_eq_expression(const ast::DiffEqExpression &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_discrete_block(const ast::DiscreteBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_double(const ast::Double &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_double_unit(const ast::DoubleUnit &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_eigen_linear_solver_block(const ast::EigenLinearSolverBlock &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_eigen_newton_solver_block(const ast::EigenNewtonSolverBlock &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_electrode_cur_var(const ast::ElectrodeCurVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_electrode_current(const ast::ElectrodeCurrent &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_else_if_statement(const ast::ElseIfStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_else_statement(const ast::ElseStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_expression(const ast::Expression &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_expression_statement(const ast::ExpressionStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_extern_var(const ast::ExternVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_external(const ast::External &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_factor_def(const ast::FactorDef &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_float(const ast::Float &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_for_netcon(const ast::ForNetcon &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_from_statement(const ast::FromStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_function_block(const ast::FunctionBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_function_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_function_table_block(const ast::FunctionTableBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_global(const ast::Global &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_global_var(const ast::GlobalVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_identifier(const ast::Identifier &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_if_statement(const ast::IfStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_include(const ast::Include &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_independent_block(const ast::IndependentBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_indexed_name(const ast::IndexedName &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_initial_block(const ast::InitialBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_integer(const ast::Integer &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_kinetic_block(const ast::KineticBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_lag_statement(const ast::LagStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_limits(const ast::Limits &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_lin_equation(const ast::LinEquation &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_line_comment(const ast::LineComment &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_linear_block(const ast::LinearBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_local_list_statement(const ast::LocalListStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_local_var(const ast::LocalVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_lon_difuse(const ast::LonDifuse &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_model(const ast::Model &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_mutex_lock(const ast::MutexLock &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_mutex_unlock(const ast::MutexUnlock &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_name(const ast::Name &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_net_receive_block(const ast::NetReceiveBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_neuron_block(const ast::NeuronBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_node(const ast::Node &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_non_lin_equation(const ast::NonLinEquation &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_non_linear_block(const ast::NonLinearBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_nonspecific(const ast::Nonspecific &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_nonspecific_cur_var(const ast::NonspecificCurVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_nrn_state_block(const ast::NrnStateBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_number(const ast::Number &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_number_range(const ast::NumberRange &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_ontology_statement(const ast::OntologyStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_param_assign(const ast::ParamAssign &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_param_block(const ast::ParamBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_paren_expression(const ast::ParenExpression &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_pointer(const ast::Pointer &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_pointer_var(const ast::PointerVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_prime_name(const ast::PrimeName &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_procedure_block(const ast::ProcedureBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_program(const ast::Program &program) overridenmodl::codegen::CodegenCppVisitorvirtual + visit_protect_statement(const ast::ProtectStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_random_var(const ast::RandomVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_random_var_list(const ast::RandomVarList &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_range(const ast::Range &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_range_var(const ast::RangeVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_react_var_name(const ast::ReactVarName &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_reaction_operator(const ast::ReactionOperator &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_reaction_statement(const ast::ReactionStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_read_ion_var(const ast::ReadIonVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_solution_expression(const ast::SolutionExpression &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_solve_block(const ast::SolveBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_state_block(const ast::StateBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_statement(const ast::Statement &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_statement_block(const ast::StatementBlock &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_string(const ast::String &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_suffix(const ast::Suffix &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_table_statement(const ast::TableStatement &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_thread_safe(const ast::ThreadSafe &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_unary_expression(const ast::UnaryExpression &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_unary_operator(const ast::UnaryOperator &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_unit(const ast::Unit &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_unit_block(const ast::UnitBlock &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_unit_def(const ast::UnitDef &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_unit_state(const ast::UnitState &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_update_dt(const ast::UpdateDt &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_useion(const ast::Useion &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_valence(const ast::Valence &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_var_name(const ast::VarName &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_verbatim(const ast::Verbatim &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_watch(const ast::Watch &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_watch_statement(const ast::WatchStatement &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + visit_while_statement(const ast::WhileStatement &node) overridenmodl::codegen::CodegenCppVisitorprotectedvirtual + visit_wrapped_expression(const ast::WrappedExpression &node) overridenmodl::visitor::ConstAstVisitorvirtual + visit_write_ion_var(const ast::WriteIonVar &node) overridenmodl::visitor::ConstAstVisitorvirtual + write_ion_variable_name(const std::string &name)nmodl::codegen::CodegenCppVisitorprotectedstatic + ~ConstVisitor()=defaultnmodl::visitor::ConstVisitorvirtual diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html b/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html index 3926f0b3eb..a6a36052b9 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html @@ -703,6 +703,9 @@ void print_nrn_constructor () override  Print nrn_constructor function definition. More...
  +void print_callable_preamble_from_prop () + Print the set of common variables from a Prop only. More...
+  void print_nrn_destructor () override  Print nrn_destructor function definition. More...
  @@ -1860,7 +1863,7 @@

-

Definition at line 1760 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1809 of file codegen_neuron_cpp_visitor.cpp.

@@ -1887,7 +1890,7 @@

-

Definition at line 1765 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1814 of file codegen_neuron_cpp_visitor.cpp.

@@ -2094,6 +2097,35 @@

Definition at line 80 of file codegen_neuron_cpp_visitor.cpp.

+ + + +

◆ print_callable_preamble_from_prop()

+ +
+
+ + + + + +
+ + + + + + + +
void nmodl::codegen::CodegenNeuronCppVisitor::print_callable_preamble_from_prop ()
+ 		+protected
+
+ +

Print the set of common variables from a Prop only.

+ +

Definition at line 1569 of file codegen_neuron_cpp_visitor.cpp.

+
@@ -2152,7 +2184,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2082 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2131 of file codegen_neuron_cpp_visitor.cpp.

@@ -2183,7 +2215,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2066 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2115 of file codegen_neuron_cpp_visitor.cpp.

@@ -2221,7 +2253,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2035 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2084 of file codegen_neuron_cpp_visitor.cpp.

@@ -2253,7 +2285,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1910 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1959 of file codegen_neuron_cpp_visitor.cpp.

@@ -2409,7 +2441,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2057 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2106 of file codegen_neuron_cpp_visitor.cpp.

@@ -2457,7 +2489,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1485 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1491 of file codegen_neuron_cpp_visitor.cpp.

@@ -2486,7 +2518,7 @@

Definition at line 1980 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2029 of file codegen_neuron_cpp_visitor.cpp.

@@ -2577,7 +2609,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1962 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2011 of file codegen_neuron_cpp_visitor.cpp.

@@ -2672,7 +2704,7 @@

Definition at line 1463 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1469 of file codegen_neuron_cpp_visitor.cpp.

@@ -2701,7 +2733,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2104 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2154 of file codegen_neuron_cpp_visitor.cpp.

@@ -2730,7 +2762,7 @@

Definition at line 1972 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2021 of file codegen_neuron_cpp_visitor.cpp.

@@ -2759,7 +2791,7 @@

Definition at line 1327 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1333 of file codegen_neuron_cpp_visitor.cpp.

@@ -2788,7 +2820,7 @@

Definition at line 1392 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1398 of file codegen_neuron_cpp_visitor.cpp.

@@ -2865,7 +2897,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1289 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1295 of file codegen_neuron_cpp_visitor.cpp.

@@ -2926,7 +2958,7 @@

Definition at line 1997 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2046 of file codegen_neuron_cpp_visitor.cpp.

@@ -2964,7 +2996,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2147 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2197 of file codegen_neuron_cpp_visitor.cpp.

@@ -3002,7 +3034,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2134 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2184 of file codegen_neuron_cpp_visitor.cpp.

@@ -3031,7 +3063,7 @@

Definition at line 2185 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2235 of file codegen_neuron_cpp_visitor.cpp.

@@ -3096,7 +3128,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2109 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2159 of file codegen_neuron_cpp_visitor.cpp.

@@ -3126,7 +3158,7 @@

Definition at line 1282 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1288 of file codegen_neuron_cpp_visitor.cpp.

@@ -3183,7 +3215,7 @@

Definition at line 1378 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1384 of file codegen_neuron_cpp_visitor.cpp.

@@ -3214,7 +3246,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1582 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1622 of file codegen_neuron_cpp_visitor.cpp.

@@ -3242,11 +3274,10 @@

Print nrn_constructor function definition.

-

TODO: Edit for NEURON.

Implements nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1564 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1589 of file codegen_neuron_cpp_visitor.cpp.

@@ -3278,7 +3309,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1916 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1965 of file codegen_neuron_cpp_visitor.cpp.

@@ -3317,7 +3348,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1805 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1854 of file codegen_neuron_cpp_visitor.cpp.

@@ -3355,7 +3386,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1877 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1926 of file codegen_neuron_cpp_visitor.cpp.

@@ -3387,7 +3418,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1843 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1892 of file codegen_neuron_cpp_visitor.cpp.

@@ -3426,7 +3457,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1787 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1836 of file codegen_neuron_cpp_visitor.cpp.

@@ -3457,7 +3488,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1569 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1603 of file codegen_neuron_cpp_visitor.cpp.

@@ -3493,7 +3524,7 @@

Definition at line 1508 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1514 of file codegen_neuron_cpp_visitor.cpp.

@@ -3522,7 +3553,7 @@

Definition at line 1529 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1535 of file codegen_neuron_cpp_visitor.cpp.

@@ -3554,7 +3585,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1710 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1759 of file codegen_neuron_cpp_visitor.cpp.

@@ -3707,7 +3738,7 @@

Definition at line 1248 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1254 of file codegen_neuron_cpp_visitor.cpp.

@@ -3729,7 +3760,7 @@

Definition at line 1431 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1437 of file codegen_neuron_cpp_visitor.cpp.

@@ -3760,7 +3791,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2045 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2094 of file codegen_neuron_cpp_visitor.cpp.

@@ -4031,7 +4062,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 2231 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 2281 of file codegen_neuron_cpp_visitor.cpp.

diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.js b/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.js index 608915547b..b4f2889565 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.js +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.js @@ -26,6 +26,7 @@ var classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor = [ "position_of_float_var", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#afdd6466ebac569ec670c3b6f4ca11d3e", null ], [ "position_of_int_var", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a8c348f1869653cec3dcc39b1866bab97", null ], [ "print_atomic_reduction_pragma", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a910f9f22e6fbdae4eefae177eb8910f9", null ], + [ "print_callable_preamble_from_prop", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a47b63167dd62680e43439a45833b5666", null ], [ "print_check_table_function_prototypes", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a4ad426a930f14bc970072c5a57fb2bc9", null ], [ "print_codegen_routines", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a9f9d3aebd2dc5bbc05e0cb7e9a707c7f", null ], [ "print_compute_functions", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a94f4993226aa53f6095ad4a44fe47420", null ], diff --git a/doxygen/codegen__neuron__cpp__visitor_8hpp_source.html b/doxygen/codegen__neuron__cpp__visitor_8hpp_source.html index 3d27010aea..72856f3d3f 100644 --- a/doxygen/codegen__neuron__cpp__visitor_8hpp_source.html +++ b/doxygen/codegen__neuron__cpp__visitor_8hpp_source.html @@ -586,241 +586,246 @@
490  *
491  */
492  void print_nrn_constructor() override;
-
493 
-
494 
-
495  /**
-
496  * Print nrn_destructor function definition
-
497  *
-
498  */
-
499  void print_nrn_destructor() override;
-
500 
-
501 
-
502  /**
-
503  * Print nrn_alloc function definition
-
504  *
-
505  */
-
506  void print_nrn_alloc() override;
-
507 
-
508 
-
509  /**
-
510  * Print nrn_jacob function definition
-
511  *
-
512  */
-
513  void print_nrn_jacob();
-
514 
-
515 
-
516  /****************************************************************************************/
-
517  /* Print nrn_state routine */
-
518  /****************************************************************************************/
+
493 
+
494  /**
+
495  * Print the set of common variables from a `Prop` only.
+
496  */
+
497  void print_callable_preamble_from_prop();
+
498 
+
499  /**
+
500  * Print nrn_destructor function definition
+
501  *
+
502  */
+
503  void print_nrn_destructor() override;
+
504 
+
505 
+
506  /**
+
507  * Print nrn_alloc function definition
+
508  *
+
509  */
+
510  void print_nrn_alloc() override;
+
511 
+
512 
+
513  /**
+
514  * Print nrn_jacob function definition
+
515  *
+
516  */
+
517  void print_nrn_jacob();
+
518 
519 
-
520 
-
521  /**
-
522  * Print nrn_state / state update function definition
-
523  */
-
524  void print_nrn_state() override;
-
525 
-
526 
-
527  /****************************************************************************************/
-
528  /* Print nrn_cur related routines */
-
529  /****************************************************************************************/
+
520  /****************************************************************************************/
+
521  /* Print nrn_state routine */
+
522  /****************************************************************************************/
+
523 
+
524 
+
525  /**
+
526  * Print nrn_state / state update function definition
+
527  */
+
528  void print_nrn_state() override;
+
529 
530 
-
531  std::string nrn_current_arguments();
-
532  ParamVector nrn_current_parameters();
-
533 
-
534  /**
-
535  * Print the \c nrn_current kernel
-
536  *
-
537  * \note nrn_cur_kernel will have two calls to nrn_current if no conductance keywords specified
-
538  * \param node the AST node representing the NMODL breakpoint block
-
539  */
-
540  void print_nrn_current(const ast::BreakpointBlock& node) override;
-
541 
-
542 
-
543  /**
-
544  * Print the \c nrn\_cur kernel with NMODL \c conductance keyword provisions
-
545  *
-
546  * If the NMODL \c conductance keyword is used in the \c breakpoint block, then
-
547  * CodegenCoreneuronCppVisitor::print_nrn_cur_kernel will use this printer
-
548  *
-
549  * \param node the AST node representing the NMODL breakpoint block
-
550  */
-
551  void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock& node) override;
-
552 
-
553 
-
554  /**
-
555  * Print the \c nrn\_cur kernel without NMODL \c conductance keyword provisions
-
556  *
-
557  * If the NMODL \c conductance keyword is \b not used in the \c breakpoint block, then
-
558  * CodegenCoreneuronCppVisitor::print_nrn_cur_kernel will use this printer
-
559  */
-
560  void print_nrn_cur_non_conductance_kernel() override;
-
561 
-
562 
-
563  /**
-
564  * Print main body of nrn_cur function
-
565  * \param node the AST node representing the NMODL breakpoint block
-
566  */
-
567  void print_nrn_cur_kernel(const ast::BreakpointBlock& node) override;
-
568 
-
569 
-
570  /**
-
571  * Print fast membrane current calculation code
-
572  */
-
573  void print_fast_imem_calculation() override;
-
574 
-
575 
-
576  /**
-
577  * Print nrn_cur / current update function definition
-
578  */
-
579  void print_nrn_cur() override;
-
580 
-
581 
-
582  /****************************************************************************************/
-
583  /* Main code printing entry points */
-
584  /****************************************************************************************/
+
531  /****************************************************************************************/
+
532  /* Print nrn_cur related routines */
+
533  /****************************************************************************************/
+
534 
+
535  std::string nrn_current_arguments();
+
536  ParamVector nrn_current_parameters();
+
537 
+
538  /**
+
539  * Print the \c nrn_current kernel
+
540  *
+
541  * \note nrn_cur_kernel will have two calls to nrn_current if no conductance keywords specified
+
542  * \param node the AST node representing the NMODL breakpoint block
+
543  */
+
544  void print_nrn_current(const ast::BreakpointBlock& node) override;
+
545 
+
546 
+
547  /**
+
548  * Print the \c nrn\_cur kernel with NMODL \c conductance keyword provisions
+
549  *
+
550  * If the NMODL \c conductance keyword is used in the \c breakpoint block, then
+
551  * CodegenCoreneuronCppVisitor::print_nrn_cur_kernel will use this printer
+
552  *
+
553  * \param node the AST node representing the NMODL breakpoint block
+
554  */
+
555  void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock& node) override;
+
556 
+
557 
+
558  /**
+
559  * Print the \c nrn\_cur kernel without NMODL \c conductance keyword provisions
+
560  *
+
561  * If the NMODL \c conductance keyword is \b not used in the \c breakpoint block, then
+
562  * CodegenCoreneuronCppVisitor::print_nrn_cur_kernel will use this printer
+
563  */
+
564  void print_nrn_cur_non_conductance_kernel() override;
+
565 
+
566 
+
567  /**
+
568  * Print main body of nrn_cur function
+
569  * \param node the AST node representing the NMODL breakpoint block
+
570  */
+
571  void print_nrn_cur_kernel(const ast::BreakpointBlock& node) override;
+
572 
+
573 
+
574  /**
+
575  * Print fast membrane current calculation code
+
576  */
+
577  void print_fast_imem_calculation() override;
+
578 
+
579 
+
580  /**
+
581  * Print nrn_cur / current update function definition
+
582  */
+
583  void print_nrn_cur() override;
+
584 
585 
-
586 
-
587  /**
-
588  * Print all includes
-
589  *
-
590  */
-
591  void print_headers_include() override;
-
592 
-
593 
-
594  /**
-
595  * Print all NEURON macros
-
596  *
-
597  */
-
598  void print_macro_definitions();
-
599 
-
600 
-
601  /**
-
602  * Print extern declarations for neuron global variables.
-
603  *
-
604  * Examples include `celsius`.
-
605  */
-
606  void print_neuron_global_variable_declarations();
-
607 
-
608 
-
609  /**
-
610  * Print NEURON global variable macros
-
611  *
-
612  */
-
613  void print_global_macros();
-
614 
-
615 
-
616  /**
-
617  * Print mechanism variables' related macros
-
618  *
-
619  */
-
620  void print_mechanism_variables_macros();
-
621 
-
622 
-
623  /**
-
624  * Print all classes
-
625  * \param print_initializers Whether to include default values.
-
626  */
-
627  void print_data_structures(bool print_initializers) override;
-
628 
-
629  /** Print `make_*_instance`.
+
586  /****************************************************************************************/
+
587  /* Main code printing entry points */
+
588  /****************************************************************************************/
+
589 
+
590 
+
591  /**
+
592  * Print all includes
+
593  *
+
594  */
+
595  void print_headers_include() override;
+
596 
+
597 
+
598  /**
+
599  * Print all NEURON macros
+
600  *
+
601  */
+
602  void print_macro_definitions();
+
603 
+
604 
+
605  /**
+
606  * Print extern declarations for neuron global variables.
+
607  *
+
608  * Examples include `celsius`.
+
609  */
+
610  void print_neuron_global_variable_declarations();
+
611 
+
612 
+
613  /**
+
614  * Print NEURON global variable macros
+
615  *
+
616  */
+
617  void print_global_macros();
+
618 
+
619 
+
620  /**
+
621  * Print mechanism variables' related macros
+
622  *
+
623  */
+
624  void print_mechanism_variables_macros();
+
625 
+
626 
+
627  /**
+
628  * Print all classes
+
629  * \param print_initializers Whether to include default values.
630  */
-
631  void print_make_instance() const;
+
631  void print_data_structures(bool print_initializers) override;
632 
-
633  /** Print `make_*_node_data`.
+
633  /** Print `make_*_instance`.
634  */
-
635  void print_make_node_data() const;
+
635  void print_make_instance() const;
636 
-
637  /**
-
638  * Set v_unused (voltage) for NRN_PRCELLSTATE feature
-
639  */
-
640  void print_v_unused() const override;
-
641 
-
642 
-
643  /**
-
644  * Set g_unused (conductance) for NRN_PRCELLSTATE feature
-
645  */
-
646  void print_g_unused() const override;
-
647 
-
648 
-
649  /**
-
650  * Print all compute functions for every backend
-
651  *
-
652  */
-
653  void print_compute_functions() override;
-
654 
-
655 
-
656  /**
-
657  * Print entry point to code generation
-
658  *
-
659  */
-
660  void print_codegen_routines() override;
-
661 
-
662 
-
663  void print_ion_variable() override;
-
664 
+
637  /** Print `make_*_node_data`.
+
638  */
+
639  void print_make_node_data() const;
+
640 
+
641  /**
+
642  * Set v_unused (voltage) for NRN_PRCELLSTATE feature
+
643  */
+
644  void print_v_unused() const override;
+
645 
+
646 
+
647  /**
+
648  * Set g_unused (conductance) for NRN_PRCELLSTATE feature
+
649  */
+
650  void print_g_unused() const override;
+
651 
+
652 
+
653  /**
+
654  * Print all compute functions for every backend
+
655  *
+
656  */
+
657  void print_compute_functions() override;
+
658 
+
659 
+
660  /**
+
661  * Print entry point to code generation
+
662  *
+
663  */
+
664  void print_codegen_routines() override;
665 
-
666  /****************************************************************************************/
-
667  /* Overloaded visitor routines */
-
668  /****************************************************************************************/
+
666 
+
667  void print_ion_variable() override;
+
668 
669 
-
670 
-
671  void visit_watch_statement(const ast::WatchStatement& node) override;
-
672 
+
670  /****************************************************************************************/
+
671  /* Overloaded visitor routines */
+
672  /****************************************************************************************/
673 
674 
-
675 
-
676  public:
-
677  /****************************************************************************************/
-
678  /* Public printing routines for code generation for use in unit tests */
-
679  /****************************************************************************************/
-
680  ParamVector functor_params() override;
-
681 
-
682  /**
-
683  * Print the structure that wraps all range and int variables required for the NMODL
-
684  *
-
685  * \param print_initializers Whether or not default values for variables
-
686  * be included in the struct declaration.
-
687  */
-
688  void print_mechanism_range_var_structure(bool print_initializers) override;
-
689 
-
690  /**
-
691  * Print the structure that wraps all node variables required for the NMODL.
-
692  *
-
693  * \param print_initializers Whether or not default values for variables
-
694  * be included in the struct declaration.
-
695  */
-
696  void print_node_data_structure(bool print_initializers);
-
697 
-
698  /**
-
699  * Print the data structure used to access thread variables.
-
700  */
-
701  void print_thread_variables_structure(bool print_initializers);
-
702 };
-
703 
-
704 
-
705 /** \} */ // end of codegen_backends
-
706 
-
707 } // namespace codegen
-
708 } // namespace nmodl
+
675  void visit_watch_statement(const ast::WatchStatement& node) override;
+
676 
+
677 
+
678 
+
679 
+
680  public:
+
681  /****************************************************************************************/
+
682  /* Public printing routines for code generation for use in unit tests */
+
683  /****************************************************************************************/
+
684  ParamVector functor_params() override;
+
685 
+
686  /**
+
687  * Print the structure that wraps all range and int variables required for the NMODL
+
688  *
+
689  * \param print_initializers Whether or not default values for variables
+
690  * be included in the struct declaration.
+
691  */
+
692  void print_mechanism_range_var_structure(bool print_initializers) override;
+
693 
+
694  /**
+
695  * Print the structure that wraps all node variables required for the NMODL.
+
696  *
+
697  * \param print_initializers Whether or not default values for variables
+
698  * be included in the struct declaration.
+
699  */
+
700  void print_node_data_structure(bool print_initializers);
+
701 
+
702  /**
+
703  * Print the data structure used to access thread variables.
+
704  */
+
705  void print_thread_variables_structure(bool print_initializers);
+
706 };
+
707 
+
708 
+
709 /** \} */ // end of codegen_backends
+
710 
+
711 } // namespace codegen
+
712 } // namespace nmodl
-
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_destructor
void print_nrn_destructor() override
Print nrn_destructor function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1569
-
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_non_conductance_kernel
void print_nrn_cur_non_conductance_kernel() override
Print the nrn_cur kernel without NMODL conductance keyword provisions.
Definition: codegen_neuron_cpp_visitor.cpp:1843
+
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_destructor
void print_nrn_destructor() override
Print nrn_destructor function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1603
+
nmodl::codegen::CodegenNeuronCppVisitor::print_callable_preamble_from_prop
void print_callable_preamble_from_prop()
Print the set of common variables from a Prop only.
Definition: codegen_neuron_cpp_visitor.cpp:1569
+
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_non_conductance_kernel
void print_nrn_cur_non_conductance_kernel() override
Print the nrn_cur kernel without NMODL conductance keyword provisions.
Definition: codegen_neuron_cpp_visitor.cpp:1892
nmodl::codegen::CodegenNeuronCppVisitor::py_function_signature
std::string py_function_signature(const std::string &function_or_procedure_name) const
Get the signature of the npy <func_or_proc_name> function.
Definition: codegen_neuron_cpp_visitor.cpp:505
nmodl::codegen::IndexVariableInfo
Helper to represent information about index/int variables.
Definition: codegen_cpp_visitor.hpp:127
-
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur
void print_nrn_cur() override
Print nrn_cur / current update function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1916
-
nmodl::codegen::CodegenNeuronCppVisitor::print_macro_definitions
void print_macro_definitions()
Print all NEURON macros.
Definition: codegen_neuron_cpp_visitor.cpp:1972
+
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur
void print_nrn_cur() override
Print nrn_cur / current update function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1965
+
nmodl::codegen::CodegenNeuronCppVisitor::print_macro_definitions
void print_macro_definitions()
Print all NEURON macros.
Definition: codegen_neuron_cpp_visitor.cpp:2021
nmodl::codegen::CodegenCppVisitor::CodegenCppVisitor
CodegenCppVisitor(std::string mod_filename, const std::string &output_dir, std::string float_type, const bool optimize_ionvar_copies, std::unique_ptr< nmodl::utils::Blame > blame)
Constructs the C++ code generator visitor.
Definition: codegen_cpp_visitor.hpp:255
-
nmodl::codegen::CodegenNeuronCppVisitor::print_net_event_call
void print_net_event_call(const ast::FunctionCall &node) override
Print call to net_event.
Definition: codegen_neuron_cpp_visitor.cpp:2147
+
nmodl::codegen::CodegenNeuronCppVisitor::print_net_event_call
void print_net_event_call(const ast::FunctionCall &node) override
Print call to net_event.
Definition: codegen_neuron_cpp_visitor.cpp:2197
nmodl::codegen::CodegenNeuronCppVisitor::print_neuron_includes
void print_neuron_includes()
Print includes from NEURON.
Definition: codegen_neuron_cpp_visitor.cpp:722
-
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_init
void print_nrn_init(bool skip_init_check=true)
Print the nrn_init function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1508
+
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_init
void print_nrn_init(bool skip_init_check=true)
Print the nrn_init function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1514
nmodl::codegen::CodegenNeuronCppVisitor::print_hoc_py_wrapper_function_body
void print_hoc_py_wrapper_function_body(const ast::Block *function_or_procedure_block, InterpreterWrapper wrapper_type)
Definition: codegen_neuron_cpp_visitor.cpp:282
nmodl::codegen::CodegenNeuronCppVisitor::internal_method_arguments
std::string internal_method_arguments() override
Arguments for functions that are defined and used internally.
Definition: codegen_neuron_cpp_visitor.cpp:423
-
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_alloc
void print_nrn_alloc() override
Print nrn_alloc function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1582
+
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_alloc
void print_nrn_alloc() override
Print nrn_alloc function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1622
nmodl::codegen::CodegenNeuronCppVisitor::register_mechanism_arguments
std::string register_mechanism_arguments() const override
Arguments for register_mech or point_register_mech function.
Definition: codegen_neuron_cpp_visitor.cpp:479
nmodl::codegen::CodegenNeuronCppVisitor::position_of_int_var
int position_of_int_var(const std::string &name) const override
Determine the position in the data array for a given int variable.
Definition: codegen_neuron_cpp_visitor.cpp:69
- +
nmodl::codegen::CodegenNeuronCppVisitor::table_thread_function_name
std::string table_thread_function_name() const
Name of the threaded table checking function.
Definition: codegen_neuron_cpp_visitor.cpp:55
nmodl::codegen::CodegenNeuronCppVisitor::optimize_ion_variable_copies
bool optimize_ion_variable_copies() const override
Check if ion variable copies should be avoided.
Definition: codegen_neuron_cpp_visitor.cpp:84
nmodl::codegen::CodegenNeuronCppVisitor::hoc_function_name
std::string hoc_function_name(const std::string &function_or_procedure_name) const
All functions and procedures need a hoc <func_or_proc_name> to be available to the HOC interpreter.
Definition: codegen_neuron_cpp_visitor.cpp:484
@@ -831,20 +836,20 @@
symbol_table.hpp
Implement classes for representing symbol table at block and file scope.
nmodl::codegen::CodegenNeuronCppVisitor::backend_name
std::string backend_name() const override
Name of the code generation backend.
Definition: codegen_neuron_cpp_visitor.cpp:50
nmodl::codegen::CodegenNeuronCppVisitor::process_verbatim_text
std::string process_verbatim_text(std::string const &text) override
Process a verbatim block for possible variable renaming.
Definition: codegen_neuron_cpp_visitor.cpp:473
- +
nmodl::codegen::CodegenNeuronCppVisitor::print_global_param_default_values
void print_global_param_default_values()
Print global struct with default value of RANGE PARAMETERs.
Definition: codegen_neuron_cpp_visitor.cpp:952
-
nmodl::codegen::CodegenNeuronCppVisitor::print_g_unused
void print_g_unused() const override
Set g_unused (conductance) for NRN_PRCELLSTATE feature.
Definition: codegen_neuron_cpp_visitor.cpp:2057
-
nmodl::codegen::CodegenNeuronCppVisitor::visit_watch_statement
void visit_watch_statement(const ast::WatchStatement &node) override
TODO: Edit for NEURON.
Definition: codegen_neuron_cpp_visitor.cpp:2231
-
nmodl::codegen::CodegenNeuronCppVisitor::print_net_send_call
void print_net_send_call(const ast::FunctionCall &node) override
Print call to net_send.
Definition: codegen_neuron_cpp_visitor.cpp:2109
-
nmodl::codegen::CodegenNeuronCppVisitor::print_net_move_call
void print_net_move_call(const ast::FunctionCall &node) override
Print call to net_move.
Definition: codegen_neuron_cpp_visitor.cpp:2134
+
nmodl::codegen::CodegenNeuronCppVisitor::print_g_unused
void print_g_unused() const override
Set g_unused (conductance) for NRN_PRCELLSTATE feature.
Definition: codegen_neuron_cpp_visitor.cpp:2106
+
nmodl::codegen::CodegenNeuronCppVisitor::visit_watch_statement
void visit_watch_statement(const ast::WatchStatement &node) override
TODO: Edit for NEURON.
Definition: codegen_neuron_cpp_visitor.cpp:2281
+
nmodl::codegen::CodegenNeuronCppVisitor::print_net_send_call
void print_net_send_call(const ast::FunctionCall &node) override
Print call to net_send.
Definition: codegen_neuron_cpp_visitor.cpp:2159
+
nmodl::codegen::CodegenNeuronCppVisitor::print_net_move_call
void print_net_move_call(const ast::FunctionCall &node) override
Print call to net_move.
Definition: codegen_neuron_cpp_visitor.cpp:2184
nmodl::codegen::CodegenNeuronCppVisitor::thread_variable_name
std::string thread_variable_name(const ThreadVariableInfo &var_info, bool use_instance=true) const
Determine the C++ string to print for thread variables.
Definition: codegen_neuron_cpp_visitor.cpp:594
-
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_state
void print_nrn_state() override
Print nrn_state / state update function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1710
-
nmodl::codegen::CodegenNeuronCppVisitor::print_initial_block
void print_initial_block(const ast::InitialBlock *node)
Print the initial block.
Definition: codegen_neuron_cpp_visitor.cpp:1463
-
nmodl::codegen::CodegenNeuronCppVisitor::print_global_function_common_code
void print_global_function_common_code(BlockType type, const std::string &function_name="") override
Print common code for global functions like nrn_init, nrn_cur and nrn_state.
Definition: codegen_neuron_cpp_visitor.cpp:1485
+
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_state
void print_nrn_state() override
Print nrn_state / state update function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1759
+
nmodl::codegen::CodegenNeuronCppVisitor::print_initial_block
void print_initial_block(const ast::InitialBlock *node)
Print the initial block.
Definition: codegen_neuron_cpp_visitor.cpp:1469
+
nmodl::codegen::CodegenNeuronCppVisitor::print_global_function_common_code
void print_global_function_common_code(BlockType type, const std::string &function_name="") override
Print common code for global functions like nrn_init, nrn_cur and nrn_state.
Definition: codegen_neuron_cpp_visitor.cpp:1491
nmodl::codegen::CodegenNeuronCppVisitor::float_variable_name
std::string float_variable_name(const SymbolType &symbol, bool use_instance) const override
Determine the name of a float variable given its symbol.
Definition: codegen_neuron_cpp_visitor.cpp:546
-
nmodl::codegen::CodegenNeuronCppVisitor::print_v_unused
void print_v_unused() const override
Set v_unused (voltage) for NRN_PRCELLSTATE feature.
Definition: codegen_neuron_cpp_visitor.cpp:2045
- +
nmodl::codegen::CodegenNeuronCppVisitor::print_v_unused
void print_v_unused() const override
Set v_unused (voltage) for NRN_PRCELLSTATE feature.
Definition: codegen_neuron_cpp_visitor.cpp:2094
+
nmodl::codegen::CodegenNeuronCppVisitor::functor_params
ParamVector functor_params() override
The parameters of the Newton solver "functor".
Definition: codegen_neuron_cpp_visitor.cpp:774
codegen_cpp_visitor.hpp
Visitor for printing C++ code compatible with legacy api of CoreNEURON
codegen_naming.hpp
@@ -852,71 +857,71 @@
nmodl::ast::InitialBlock
Represents a INITIAL block in the NMODL.
Definition: initial_block.hpp:49
nmodl::codegen::CodegenNeuronCppVisitor::print_point_process_function_definitions
void print_point_process_function_definitions()
Print POINT_PROCESS related functions Wrap external NEURON functions related to POINT_PROCESS mechani...
Definition: codegen_neuron_cpp_visitor.cpp:97
nmodl::ast::WatchStatement
Represent WATCH statement in NMODL.
Definition: watch_statement.hpp:39
-
nmodl::codegen::CodegenNeuronCppVisitor::print_neuron_global_variable_declarations
void print_neuron_global_variable_declarations()
Print extern declarations for neuron global variables.
Definition: codegen_neuron_cpp_visitor.cpp:1282
+
nmodl::codegen::CodegenNeuronCppVisitor::print_neuron_global_variable_declarations
void print_neuron_global_variable_declarations()
Print extern declarations for neuron global variables.
Definition: codegen_neuron_cpp_visitor.cpp:1288
nmodl::ast::BreakpointBlock
Represents a BREAKPOINT block in NMODL.
Definition: breakpoint_block.hpp:53
-
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_conductance_kernel
void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
Print the nrn_cur kernel with NMODL conductance keyword provisions.
Definition: codegen_neuron_cpp_visitor.cpp:1805
+
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_conductance_kernel
void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
Print the nrn_cur kernel with NMODL conductance keyword provisions.
Definition: codegen_neuron_cpp_visitor.cpp:1854
nmodl::codegen::CodegenNeuronCppVisitor::int_variable_name
std::string int_variable_name(const IndexVariableInfo &symbol, const std::string &name, bool use_instance) const override
Determine the name of an int variable given its symbol.
Definition: codegen_neuron_cpp_visitor.cpp:562
nmodl::codegen::InterpreterWrapper
InterpreterWrapper
Enum to switch between HOC and Python wrappers for functions and procedures defined in mechanisms.
Definition: codegen_neuron_cpp_visitor.hpp:50
nmodl::codegen::CodegenNeuronCppVisitor::print_global_variables_for_hoc
void print_global_variables_for_hoc() override
Print byte arrays that register scalar and vector variables for hoc interface.
Definition: codegen_neuron_cpp_visitor.cpp:965
nmodl::codegen::CodegenNeuronCppVisitor::print_standard_includes
void print_standard_includes() override
Print standard C/C++ includes.
Definition: codegen_neuron_cpp_visitor.cpp:706
nmodl::codegen::CodegenNeuronCppVisitor::codegen_thread_variables
std::vector< ThreadVariableInfo > codegen_thread_variables
GLOBAL variables in THREADSAFE MOD files that are not read-only are converted to thread variables.
Definition: codegen_neuron_cpp_visitor.hpp:103
-
nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_range_var_structure
void print_mechanism_range_var_structure(bool print_initializers) override
Print the structure that wraps all range and int variables required for the NMODL.
Definition: codegen_neuron_cpp_visitor.cpp:1289
+
nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_range_var_structure
void print_mechanism_range_var_structure(bool print_initializers) override
Print the structure that wraps all range and int variables required for the NMODL.
Definition: codegen_neuron_cpp_visitor.cpp:1295
nmodl::codegen::CodegenNeuronCppVisitor::add_variable_tqitem
void add_variable_tqitem(std::vector< IndexVariableInfo > &variables) override
Add the variable tqitem during get_int_variables.
Definition: codegen_neuron_cpp_visitor.cpp:409
code_printer.hpp
Helper class for printing C/C++ code.
nmodl::codegen::CodegenNeuronCppVisitor::hoc_function_signature
std::string hoc_function_signature(const std::string &function_or_procedure_name) const
Get the signature of the hoc <func_or_proc_name> function.
Definition: codegen_neuron_cpp_visitor.cpp:490
-
nmodl::codegen::CodegenNeuronCppVisitor::print_thread_variables_structure
void print_thread_variables_structure(bool print_initializers)
Print the data structure used to access thread variables.
Definition: codegen_neuron_cpp_visitor.cpp:1431
-
nmodl::codegen::CodegenNeuronCppVisitor::print_compute_functions
void print_compute_functions() override
Print all compute functions for every backend.
Definition: codegen_neuron_cpp_visitor.cpp:2066
-
nmodl::codegen::CodegenNeuronCppVisitor::print_thread_memory_callbacks
void print_thread_memory_callbacks()
Print thread variable (de-)initialization functions.
Definition: codegen_neuron_cpp_visitor.cpp:1248
-
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_kernel
void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
Print main body of nrn_cur function.
Definition: codegen_neuron_cpp_visitor.cpp:1877
+
nmodl::codegen::CodegenNeuronCppVisitor::print_thread_variables_structure
void print_thread_variables_structure(bool print_initializers)
Print the data structure used to access thread variables.
Definition: codegen_neuron_cpp_visitor.cpp:1437
+
nmodl::codegen::CodegenNeuronCppVisitor::print_compute_functions
void print_compute_functions() override
Print all compute functions for every backend.
Definition: codegen_neuron_cpp_visitor.cpp:2115
+
nmodl::codegen::CodegenNeuronCppVisitor::print_thread_memory_callbacks
void print_thread_memory_callbacks()
Print thread variable (de-)initialization functions.
Definition: codegen_neuron_cpp_visitor.cpp:1254
+
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_kernel
void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
Print main body of nrn_cur function.
Definition: codegen_neuron_cpp_visitor.cpp:1926
nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_register
void print_mechanism_register() override
Print the mechanism registration function.
Definition: codegen_neuron_cpp_visitor.cpp:1082
-
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_jacob
void print_nrn_jacob()
Print nrn_jacob function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1529
+
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_jacob
void print_nrn_jacob()
Print nrn_jacob function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1535
codegen_info.hpp
Various types to store code generation specific information.
-
nmodl::codegen::CodegenNeuronCppVisitor::print_fast_imem_calculation
void print_fast_imem_calculation() override
Print fast membrane current calculation code.
Definition: codegen_neuron_cpp_visitor.cpp:1910
-
nmodl::codegen::CodegenNeuronCppVisitor::print_data_structures
void print_data_structures(bool print_initializers) override
Print all classes.
Definition: codegen_neuron_cpp_visitor.cpp:2035
+
nmodl::codegen::CodegenNeuronCppVisitor::print_fast_imem_calculation
void print_fast_imem_calculation() override
Print fast membrane current calculation code.
Definition: codegen_neuron_cpp_visitor.cpp:1959
+
nmodl::codegen::CodegenNeuronCppVisitor::print_data_structures
void print_data_structures(bool print_initializers) override
Print all classes.
Definition: codegen_neuron_cpp_visitor.cpp:2084
nmodl::codegen::CodegenNeuronCppVisitor::print_sdlists_init
void print_sdlists_init(bool print_initializers) override
Definition: codegen_neuron_cpp_visitor.cpp:733
nmodl::codegen::CodegenNeuronCppVisitor::external_method_arguments
const std::string external_method_arguments() noexcept override
Arguments for external functions called from generated code.
Definition: codegen_neuron_cpp_visitor.cpp:448
nmodl::codegen::CodegenNeuronCppVisitor::py_function_name
std::string py_function_name(const std::string &function_or_procedure_name) const
In non POINT_PROCESS mechanisms all functions and procedures need a py <func_or_proc_name> to be avai...
Definition: codegen_neuron_cpp_visitor.cpp:499
nmodl::codegen::ThreadVariableInfo::offset
size_t offset
The global variables ahead of this one require offset doubles to store.
Definition: codegen_neuron_cpp_visitor.hpp:71
-
nmodl::codegen::CodegenNeuronCppVisitor::print_node_data_structure
void print_node_data_structure(bool print_initializers)
Print the structure that wraps all node variables required for the NMODL.
Definition: codegen_neuron_cpp_visitor.cpp:1378
+
nmodl::codegen::CodegenNeuronCppVisitor::print_node_data_structure
void print_node_data_structure(bool print_initializers)
Print the structure that wraps all node variables required for the NMODL.
Definition: codegen_neuron_cpp_visitor.cpp:1384
nmodl::codegen::CppObjectSpecifier::Inline
@ Inline
-
nmodl::codegen::CodegenNeuronCppVisitor::print_make_instance
void print_make_instance() const
Print make_*_instance.
Definition: codegen_neuron_cpp_visitor.cpp:1327
+
nmodl::codegen::CodegenNeuronCppVisitor::print_make_instance
void print_make_instance() const
Print make_*_instance.
Definition: codegen_neuron_cpp_visitor.cpp:1333
nmodl::codegen::CodegenNeuronCppVisitor::print_atomic_reduction_pragma
void print_atomic_reduction_pragma() override
Print atomic update pragma for reduction statements.
Definition: codegen_neuron_cpp_visitor.cpp:80
nmodl::codegen::CodegenNeuronCppVisitor::print_setdata_functions
void print_setdata_functions()
Print NEURON functions related to setting global variables of the mechanism.
Definition: codegen_neuron_cpp_visitor.cpp:188
nmodl::codegen::get_name
std::string get_name(const std::shared_ptr< symtab::Symbol > &sym)
Definition: codegen_cpp_visitor.hpp:172
nmodl::codegen::ShadowUseStatement
Represents ion write statement during code generation.
Definition: codegen_cpp_visitor.hpp:166
-
nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_variables_macros
void print_mechanism_variables_macros()
Print mechanism variables' related macros.
Definition: codegen_neuron_cpp_visitor.cpp:1997
+
nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_variables_macros
void print_mechanism_variables_macros()
Print mechanism variables' related macros.
Definition: codegen_neuron_cpp_visitor.cpp:2046
nmodl::codegen::CodegenNeuronCppVisitor
Visitor for printing C++ code compatible with legacy api of NEURON
Definition: codegen_neuron_cpp_visitor.hpp:90
-
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_constructor
void print_nrn_constructor() override
Print nrn_constructor function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1564
+
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_constructor
void print_nrn_constructor() override
Print nrn_constructor function definition.
Definition: codegen_neuron_cpp_visitor.cpp:1589
nmodl::codegen::CodegenNeuronCppVisitor::print_check_table_function_prototypes
void print_check_table_function_prototypes()
Print all check_* function declarations.
Definition: codegen_neuron_cpp_visitor.cpp:142
logger.hpp
Implement logger based on spdlog library.
nmodl::SymbolType
parser::NmodlParser::symbol_type SymbolType
Definition: main_nmodl.cpp:33
nmodl::codegen::BlockType
BlockType
Helper to represent various block types.
Definition: codegen_cpp_visitor.hpp:56
nmodl::codegen::ThreadVariableInfo::index
size_t index
There index global variables ahead of this one.
Definition: codegen_neuron_cpp_visitor.hpp:66
-
nmodl::codegen::CodegenNeuronCppVisitor::print_headers_include
void print_headers_include() override
Print all includes.
Definition: codegen_neuron_cpp_visitor.cpp:1962
+
nmodl::codegen::CodegenNeuronCppVisitor::print_headers_include
void print_headers_include() override
Print all includes.
Definition: codegen_neuron_cpp_visitor.cpp:2011
nmodl::codegen::CodegenNeuronCppVisitor::external_method_parameters
const ParamVector external_method_parameters(bool table=false) noexcept override
Parameters for functions in generated code that are called back from external code.
Definition: codegen_neuron_cpp_visitor.cpp:454
nmodl::codegen::CodegenNeuronCppVisitor::print_function_or_procedure
void print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers={ CppObjectSpecifier::Inline}) override
Print nmodl function or procedure (common code)
Definition: codegen_neuron_cpp_visitor.cpp:240
nmodl::codegen::ThreadVariableInfo::symbol
const std::shared_ptr< symtab::Symbol > symbol
Definition: codegen_neuron_cpp_visitor.hpp:61
-
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_current
void print_nrn_current(const ast::BreakpointBlock &node) override
Print the nrn_current kernel.
Definition: codegen_neuron_cpp_visitor.cpp:1787
+
nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_current
void print_nrn_current(const ast::BreakpointBlock &node) override
Print the nrn_current kernel.
Definition: codegen_neuron_cpp_visitor.cpp:1836
nmodl::codegen::CodegenNeuronCppVisitor::position_of_float_var
int position_of_float_var(const std::string &name) const override
Determine the position in the data array for a given float variable.
Definition: codegen_neuron_cpp_visitor.cpp:64
nmodl::codegen::CodegenNeuronCppVisitor::get_variable_name
std::string get_variable_name(const std::string &name, bool use_instance=true) const override
Determine variable name in the structure of mechanism properties.
Definition: codegen_neuron_cpp_visitor.cpp:625
nmodl::codegen::CodegenCppVisitor
Visitor for printing C++ code compatible with legacy api of CoreNEURON
Definition: codegen_cpp_visitor.hpp:237
-
nmodl::codegen::CodegenNeuronCppVisitor::print_make_node_data
void print_make_node_data() const
Print make_*_node_data.
Definition: codegen_neuron_cpp_visitor.cpp:1392
+
nmodl::codegen::CodegenNeuronCppVisitor::print_make_node_data
void print_make_node_data() const
Print make_*_node_data.
Definition: codegen_neuron_cpp_visitor.cpp:1398
nmodl::codegen::CodegenNeuronCppVisitor::simulator_name
std::string simulator_name() override
Name of the simulator the code was generated for.
Definition: codegen_neuron_cpp_visitor.cpp:45
nmodl::codegen::CodegenNeuronCppVisitor::print_function_procedure_helper
void print_function_procedure_helper(const ast::Block &node) override
Common helper function to help printing function or procedure blocks.
Definition: codegen_neuron_cpp_visitor.cpp:267
nmodl::codegen::CodegenNeuronCppVisitor::add_variable_point_process
void add_variable_point_process(std::vector< IndexVariableInfo > &variables) override
Add the variable point_process during get_int_variables.
Definition: codegen_neuron_cpp_visitor.cpp:417
nmodl::codegen::CodegenNeuronCppVisitor::nrn_thread_arguments
std::string nrn_thread_arguments() const override
Arguments for "_threadargs_" macro in neuron implementation.
Definition: codegen_neuron_cpp_visitor.cpp:461
nmodl::codegen::CodegenNeuronCppVisitor::print_net_receive_registration
void print_net_receive_registration()
Print code to register the call-back for the NET_RECEIVE block.
-
nmodl::codegen::CodegenNeuronCppVisitor::print_codegen_routines
void print_codegen_routines() override
Print entry point to code generation.
Definition: codegen_neuron_cpp_visitor.cpp:2082
+
nmodl::codegen::CodegenNeuronCppVisitor::print_codegen_routines
void print_codegen_routines() override
Print entry point to code generation.
Definition: codegen_neuron_cpp_visitor.cpp:2131
nmodl::codegen::CodegenNeuronCppVisitor::append_conc_write_statements
void append_conc_write_statements(std::vector< ShadowUseStatement > &statements, const Ion &ion, const std::string &concentration) override
Generate Function call statement for nrn_wrote_conc.
Definition: codegen_neuron_cpp_visitor.cpp:520
nmodl::codegen::CodegenNeuronCppVisitor::internal_method_parameters
ParamVector internal_method_parameters() override
Parameters for internally defined functions.
Definition: codegen_neuron_cpp_visitor.cpp:429
-
nmodl::codegen::CodegenNeuronCppVisitor::print_net_receive
void print_net_receive()
Print net_receive call-back.
Definition: codegen_neuron_cpp_visitor.cpp:2185
+
nmodl::codegen::CodegenNeuronCppVisitor::print_net_receive
void print_net_receive()
Print net_receive call-back.
Definition: codegen_neuron_cpp_visitor.cpp:2235
nmodl::codegen::CodegenNeuronCppVisitor::print_function_prototypes
void print_function_prototypes() override
Print function and procedures prototype declaration.
Definition: codegen_neuron_cpp_visitor.cpp:231
nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_global_var_structure
void print_mechanism_global_var_structure(bool print_initializers) override
Print the structure that wraps all global variables used in the NMODL.
Definition: codegen_neuron_cpp_visitor.cpp:781
nmodl::codegen::CodegenNeuronCppVisitor::namespace_name
std::string namespace_name() override
Name of "our" namespace.
Definition: codegen_neuron_cpp_visitor.cpp:515
-
nmodl::codegen::CodegenNeuronCppVisitor::print_global_macros
void print_global_macros()
Print NEURON global variable macros.
Definition: codegen_neuron_cpp_visitor.cpp:1980
+
nmodl::codegen::CodegenNeuronCppVisitor::print_global_macros
void print_global_macros()
Print NEURON global variable macros.
Definition: codegen_neuron_cpp_visitor.cpp:2029
nmodl::codegen::CodegenCppVisitor::ParamVector
std::vector< std::tuple< std::string, std::string, std::string, std::string > > ParamVector
A vector of parameters represented by a 4-tuple of strings:
Definition: codegen_cpp_visitor.hpp:307
ast_visitor.hpp
Concrete visitor for all AST classes.
diff --git a/doxygen/functions_func_p.html b/doxygen/functions_func_p.html index 6d546f51a9..2637b83ee6 100644 --- a/doxygen/functions_func_p.html +++ b/doxygen/functions_func_p.html @@ -209,6 +209,9 @@

- p -

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    • process_variable() -: nmodl::visitor::DefUseAnalyzeVisitor +: nmodl::visitor::DefUseAnalyzeVisitor
    • process_verbatim_text() : nmodl::codegen::CodegenCoreneuronCppVisitor @@ -700,10 +703,10 @@

      - p -

        : nmodl::codegen::CodegenCoreneuronCppVisitor
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      • ProtectStatement() -: nmodl::ast::ProtectStatement +: nmodl::ast::ProtectStatement
      • push_block() : nmodl::printer::CodePrinter diff --git a/doxygen/functions_n.html b/doxygen/functions_n.html index 6880b14993..18b0b443dd 100644 --- a/doxygen/functions_n.html +++ b/doxygen/functions_n.html @@ -502,7 +502,7 @@

        - n -

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        - p -

        • print_before_after_block() : nmodl::codegen::CodegenCoreneuronCppVisitor
          • +
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          - p -

            : nmodl::codegen::CodegenCoreneuronCppVisitor
          • Program() -: nmodl::ast::Program +: nmodl::ast::Program
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              : nmodl::symtab::Symbol
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            • push_block() -: nmodl::printer::CodePrinter +: nmodl::printer::CodePrinter , nmodl::printer::JSONPrinter
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              x[id] = _args[1];

              So, the R in AST needs to be renamed with _args[1].

              -

              Definition at line 2170 of file codegen_neuron_cpp_visitor.cpp.

              +

              Definition at line 2220 of file codegen_neuron_cpp_visitor.cpp.

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['replaced_5fstatements_5233',['replaced_statements',['../classnmodl_1_1visitor_1_1_inline_visitor.html#a4ac2dab8490509564098820e12506cc5',1,'nmodl::visitor::InlineVisitor']]], + ['replaced_5fstatements_5frange_5234',['replaced_statements_range',['../classnmodl_1_1visitor_1_1_sympy_replace_solutions_visitor.html#a644e68bbac24239e99c800877ecb2950',1,'nmodl::visitor::SympyReplaceSolutionsVisitor']]], + ['replacements_5235',['replacements',['../classnmodl_1_1visitor_1_1_sympy_replace_solutions_visitor.html#adee0b2ddd16c3eb7648393cab3cd7455',1,'nmodl::visitor::SympyReplaceSolutionsVisitor']]], + ['require_5fwrote_5fconc_5236',['require_wrote_conc',['../structnmodl_1_1codegen_1_1_codegen_info.html#a4bcbe36d2867e8a47f8c9770b1542b42',1,'nmodl::codegen::CodegenInfo']]], + ['result_5237',['result',['../classnmodl_1_1parser_1_1_verbatim_driver.html#acbef0308b6228aa7374ad3784bcf9c7f',1,'nmodl::parser::VerbatimDriver::result()'],['../classnmodl_1_1printer_1_1_code_printer.html#afb44676fe368466b54584b99d7f32108',1,'nmodl::printer::CodePrinter::result()'],['../classnmodl_1_1printer_1_1_j_s_o_n_printer.html#abf933c244b6dafbd2d4bfcb072bac0ac',1,'nmodl::printer::JSONPrinter::result()'],['../classnmodl_1_1printer_1_1_n_m_o_d_l_printer.html#acb30bd1654b386c8a97bc8ebf1588ede',1,'nmodl::printer::NMODLPrinter::result()']]], + ['rhs_5238',['rhs',['../structnmodl_1_1codegen_1_1_shadow_use_statement.html#abaf923aecaed924ee6c7147b43b11f87',1,'nmodl::codegen::ShadowUseStatement::rhs()'],['../classnmodl_1_1parser_1_1diffeq_1_1_diff_eq_context.html#a097571cfede2e56e07c14f67da6d023d',1,'nmodl::parser::diffeq::DiffEqContext::rhs()'],['../classnmodl_1_1ast_1_1_binary_expression.html#ae7b30e477152d41c4e3bf213892d64fc',1,'nmodl::ast::BinaryExpression::rhs()'],['../classnmodl_1_1ast_1_1_non_lin_equation.html#a1eff10b19c5a8a097f476af183fcf044',1,'nmodl::ast::NonLinEquation::rhs()']]], + ['rows_5239',['rows',['../structnmodl_1_1utils_1_1_table_data.html#a605a25702332726991bf997bd9c18a7f',1,'nmodl::utils::TableData']]], + ['rsuffix_5240',['rsuffix',['../structnmodl_1_1codegen_1_1_codegen_info.html#a934bcce95f02054d82a0101b39eb0579',1,'nmodl::codegen::CodegenInfo']]] ]; diff --git a/doxygen/src_2codegen_2codegen__neuron__cpp__visitor_8cpp_source.html b/doxygen/src_2codegen_2codegen__neuron__cpp__visitor_8cpp_source.html index fd8913946b..323ec55a28 100644 --- a/doxygen/src_2codegen_2codegen__neuron__cpp__visitor_8cpp_source.html +++ b/doxygen/src_2codegen_2codegen__neuron__cpp__visitor_8cpp_source.html @@ -1216,1148 +1216,1199 @@
              1120  "_pointtype = point_register_mech({}, _hoc_create_pnt, _hoc_destroy_pnt, "
              1121  "_member_func);",
              1122  register_mech_args);
              -
              1123  } else {
              -
              1124  printer->fmt_line("register_mech({});", register_mech_args);
              -
              1125  }
              -
              1126 
              -
              1127  if (info.thread_callback_register) {
              -
              1128  printer->fmt_line("_extcall_thread.resize({});", info.thread_data_index + 1);
              -
              1129  printer->fmt_line("thread_mem_init(_extcall_thread.data());");
              -
              1130  printer->fmt_line("{} = 0;", get_variable_name("thread_data_in_use", false));
              -
              1131  }
              +
              1123 
              +
              1124  if (info.destructor_node) {
              +
              1125  printer->fmt_line("register_destructor({});",
              +
              1126  method_name(naming::NRN_DESTRUCTOR_METHOD));
              +
              1127  }
              +
              1128  } else {
              +
              1129  printer->fmt_line("register_mech({});", register_mech_args);
              +
              1130  }
              +
              1131 
              1132 
              -
              1133 
              -
              1134  /// type related information
              -
              1135  printer->add_newline();
              -
              1136  printer->fmt_line("mech_type = nrn_get_mechtype({}[1]);", get_channel_info_var_name());
              -
              1137 
              -
              1138  printer->add_line("hoc_register_parm_default(mech_type, &_parameter_defaults);");
              -
              1139 
              -
              1140  // register the table-checking function
              -
              1141  if (info.table_count > 0) {
              -
              1142  printer->fmt_line("_nrn_thread_table_reg(mech_type, {});", table_thread_function_name());
              -
              1143  }
              -
              1144 
              -
              1145  printer->add_line("_nrn_mechanism_register_data_fields(mech_type,");
              -
              1146  printer->increase_indent();
              -
              1147 
              -
              1148  const auto codegen_float_variables_size = codegen_float_variables.size();
              -
              1149  std::vector<std::string> mech_register_args;
              +
              1133  if (info.thread_callback_register) {
              +
              1134  printer->fmt_line("_extcall_thread.resize({});", info.thread_data_index + 1);
              +
              1135  printer->fmt_line("thread_mem_init(_extcall_thread.data());");
              +
              1136  printer->fmt_line("{} = 0;", get_variable_name("thread_data_in_use", false));
              +
              1137  }
              +
              1138 
              +
              1139 
              +
              1140  /// type related information
              +
              1141  printer->add_newline();
              +
              1142  printer->fmt_line("mech_type = nrn_get_mechtype({}[1]);", get_channel_info_var_name());
              +
              1143 
              +
              1144  printer->add_line("hoc_register_parm_default(mech_type, &_parameter_defaults);");
              +
              1145 
              +
              1146  // register the table-checking function
              +
              1147  if (info.table_count > 0) {
              +
              1148  printer->fmt_line("_nrn_thread_table_reg(mech_type, {});", table_thread_function_name());
              +
              1149  }
              1150 
              -
              1151  for (int i = 0; i < codegen_float_variables_size; ++i) {
              -
              1152  const auto& float_var = codegen_float_variables[i];
              -
              1153  if (float_var->is_array()) {
              -
              1154  mech_register_args.push_back(
              -
              1155  fmt::format("_nrn_mechanism_field<double>{{\"{}\", {}}} /* {} */",
              -
              1156  float_var->get_name(),
              -
              1157  float_var->get_length(),
              -
              1158  i));
              -
              1159  } else {
              -
              1160  mech_register_args.push_back(fmt::format(
              -
              1161  "_nrn_mechanism_field<double>{{\"{}\"}} /* {} */", float_var->get_name(), i));
              -
              1162  }
              -
              1163  }
              -
              1164 
              -
              1165  const auto codegen_int_variables_size = codegen_int_variables.size();
              -
              1166  for (int i = 0; i < codegen_int_variables_size; ++i) {
              -
              1167  const auto& int_var = codegen_int_variables[i];
              -
              1168  const auto& name = int_var.symbol->get_name();
              -
              1169  if (i != info.semantics[i].index) {
              -
              1170  throw std::runtime_error("Broken logic.");
              -
              1171  }
              -
              1172 
              -
              1173  auto type = "double*";
              -
              1174  if (name == naming::POINT_PROCESS_VARIABLE) {
              -
              1175  type = "Point_process*";
              -
              1176  } else if (name == naming::TQITEM_VARIABLE) {
              -
              1177  type = "void*";
              -
              1178  } else if (stringutils::starts_with(name, "style_") &&
              -
              1179  stringutils::starts_with(info.semantics[i].name, "#") &&
              -
              1180  stringutils::ends_with(info.semantics[i].name, "_ion")) {
              -
              1181  type = "int*";
              -
              1182  }
              -
              1183 
              -
              1184  mech_register_args.push_back(
              -
              1185  fmt::format("_nrn_mechanism_field<{}>{{\"{}\", \"{}\"}} /* {} */",
              -
              1186  type,
              -
              1187  name,
              -
              1188  info.semantics[i].name,
              -
              1189  i));
              -
              1190  }
              -
              1191 
              -
              1192  printer->add_multi_line(fmt::format("{}", fmt::join(mech_register_args, ",\n")));
              -
              1193 
              -
              1194  printer->decrease_indent();
              -
              1195  printer->add_line(");");
              -
              1196  printer->add_newline();
              +
              1151  printer->add_line("_nrn_mechanism_register_data_fields(mech_type,");
              +
              1152  printer->increase_indent();
              +
              1153 
              +
              1154  const auto codegen_float_variables_size = codegen_float_variables.size();
              +
              1155  std::vector<std::string> mech_register_args;
              +
              1156 
              +
              1157  for (int i = 0; i < codegen_float_variables_size; ++i) {
              +
              1158  const auto& float_var = codegen_float_variables[i];
              +
              1159  if (float_var->is_array()) {
              +
              1160  mech_register_args.push_back(
              +
              1161  fmt::format("_nrn_mechanism_field<double>{{\"{}\", {}}} /* {} */",
              +
              1162  float_var->get_name(),
              +
              1163  float_var->get_length(),
              +
              1164  i));
              +
              1165  } else {
              +
              1166  mech_register_args.push_back(fmt::format(
              +
              1167  "_nrn_mechanism_field<double>{{\"{}\"}} /* {} */", float_var->get_name(), i));
              +
              1168  }
              +
              1169  }
              +
              1170 
              +
              1171  const auto codegen_int_variables_size = codegen_int_variables.size();
              +
              1172  for (int i = 0; i < codegen_int_variables_size; ++i) {
              +
              1173  const auto& int_var = codegen_int_variables[i];
              +
              1174  const auto& name = int_var.symbol->get_name();
              +
              1175  if (i != info.semantics[i].index) {
              +
              1176  throw std::runtime_error("Broken logic.");
              +
              1177  }
              +
              1178 
              +
              1179  auto type = "double*";
              +
              1180  if (name == naming::POINT_PROCESS_VARIABLE) {
              +
              1181  type = "Point_process*";
              +
              1182  } else if (name == naming::TQITEM_VARIABLE) {
              +
              1183  type = "void*";
              +
              1184  } else if (stringutils::starts_with(name, "style_") &&
              +
              1185  stringutils::starts_with(info.semantics[i].name, "#") &&
              +
              1186  stringutils::ends_with(info.semantics[i].name, "_ion")) {
              +
              1187  type = "int*";
              +
              1188  }
              +
              1189 
              +
              1190  mech_register_args.push_back(
              +
              1191  fmt::format("_nrn_mechanism_field<{}>{{\"{}\", \"{}\"}} /* {} */",
              +
              1192  type,
              +
              1193  name,
              +
              1194  info.semantics[i].name,
              +
              1195  i));
              +
              1196  }
              1197 
              -
              1198 
              -
              1199  printer->fmt_line("hoc_register_prop_size(mech_type, {}, {});",
              -
              1200  float_variables_size(),
              -
              1201  int_variables_size());
              -
              1202 
              -
              1203  for (int i = 0; i < codegen_int_variables_size; ++i) {
              -
              1204  if (i != info.semantics[i].index) {
              -
              1205  throw std::runtime_error("Broken logic.");
              -
              1206  }
              -
              1207 
              -
              1208  printer->fmt_line("hoc_register_dparam_semantics(mech_type, {}, \"{}\");",
              -
              1209  i,
              -
              1210  info.semantics[i].name);
              -
              1211  }
              -
              1212 
              -
              1213  if (info.write_concentration) {
              -
              1214  printer->fmt_line("nrn_writes_conc(mech_type, 0);");
              -
              1215  }
              -
              1216 
              -
              1217  if (info.artificial_cell) {
              -
              1218  printer->fmt_line("add_nrn_artcell(mech_type, {});", info.tqitem_index);
              -
              1219  }
              -
              1220 
              -
              1221  if (info.net_event_used) {
              -
              1222  printer->fmt_line("add_nrn_has_net_event(mech_type);");
              -
              1223  }
              -
              1224 
              -
              1225  printer->add_line("hoc_register_var(hoc_scalar_double, hoc_vector_double, hoc_intfunc);");
              -
              1226  if (!info.point_process) {
              -
              1227  printer->add_line("hoc_register_npy_direct(mech_type, npy_direct_func_proc);");
              -
              1228  }
              -
              1229  if (info.net_receive_node) {
              -
              1230  printer->fmt_line("pnt_receive[mech_type] = nrn_net_receive_{};", info.mod_suffix);
              -
              1231  printer->fmt_line("pnt_receive_size[mech_type] = {};", info.num_net_receive_parameters);
              -
              1232  }
              -
              1233 
              -
              1234  if (info.thread_callback_register) {
              -
              1235  printer->add_line("_nrn_thread_reg(mech_type, 1, thread_mem_init);");
              -
              1236  printer->add_line("_nrn_thread_reg(mech_type, 0, thread_mem_cleanup);");
              -
              1237  }
              -
              1238 
              -
              1239  if (info.diam_used) {
              -
              1240  printer->fmt_line("{}._morphology_sym = hoc_lookup(\"morphology\");",
              -
              1241  global_struct_instance());
              -
              1242  }
              -
              1243 
              -
              1244  printer->pop_block();
              -
              1245 }
              -
              1246 
              -
              1247 
              -
              1248 void CodegenNeuronCppVisitor::print_thread_memory_callbacks() {
              -
              1249  if (!info.thread_callback_register) {
              -
              1250  return;
              -
              1251  }
              +
              1198  printer->add_multi_line(fmt::format("{}", fmt::join(mech_register_args, ",\n")));
              +
              1199 
              +
              1200  printer->decrease_indent();
              +
              1201  printer->add_line(");");
              +
              1202  printer->add_newline();
              +
              1203 
              +
              1204 
              +
              1205  printer->fmt_line("hoc_register_prop_size(mech_type, {}, {});",
              +
              1206  float_variables_size(),
              +
              1207  int_variables_size());
              +
              1208 
              +
              1209  for (int i = 0; i < codegen_int_variables_size; ++i) {
              +
              1210  if (i != info.semantics[i].index) {
              +
              1211  throw std::runtime_error("Broken logic.");
              +
              1212  }
              +
              1213 
              +
              1214  printer->fmt_line("hoc_register_dparam_semantics(mech_type, {}, \"{}\");",
              +
              1215  i,
              +
              1216  info.semantics[i].name);
              +
              1217  }
              +
              1218 
              +
              1219  if (info.write_concentration) {
              +
              1220  printer->fmt_line("nrn_writes_conc(mech_type, 0);");
              +
              1221  }
              +
              1222 
              +
              1223  if (info.artificial_cell) {
              +
              1224  printer->fmt_line("add_nrn_artcell(mech_type, {});", info.tqitem_index);
              +
              1225  }
              +
              1226 
              +
              1227  if (info.net_event_used) {
              +
              1228  printer->fmt_line("add_nrn_has_net_event(mech_type);");
              +
              1229  }
              +
              1230 
              +
              1231  printer->add_line("hoc_register_var(hoc_scalar_double, hoc_vector_double, hoc_intfunc);");
              +
              1232  if (!info.point_process) {
              +
              1233  printer->add_line("hoc_register_npy_direct(mech_type, npy_direct_func_proc);");
              +
              1234  }
              +
              1235  if (info.net_receive_node) {
              +
              1236  printer->fmt_line("pnt_receive[mech_type] = nrn_net_receive_{};", info.mod_suffix);
              +
              1237  printer->fmt_line("pnt_receive_size[mech_type] = {};", info.num_net_receive_parameters);
              +
              1238  }
              +
              1239 
              +
              1240  if (info.thread_callback_register) {
              +
              1241  printer->add_line("_nrn_thread_reg(mech_type, 1, thread_mem_init);");
              +
              1242  printer->add_line("_nrn_thread_reg(mech_type, 0, thread_mem_cleanup);");
              +
              1243  }
              +
              1244 
              +
              1245  if (info.diam_used) {
              +
              1246  printer->fmt_line("{}._morphology_sym = hoc_lookup(\"morphology\");",
              +
              1247  global_struct_instance());
              +
              1248  }
              +
              1249 
              +
              1250  printer->pop_block();
              +
              1251 }
              1252 
              -
              1253  auto static_thread_data = get_variable_name("thread_data", false);
              -
              1254  auto inuse = get_variable_name("thread_data_in_use", false);
              -
              1255  auto thread_data_index = info.thread_var_thread_id;
              -
              1256  printer->push_block("static void thread_mem_init(Datum* _thread) ");
              -
              1257  printer->push_block(fmt::format("if({})", inuse));
              -
              1258  printer->fmt_line("_thread[{}] = {{neuron::container::do_not_search, new double[{}]{{}}}};",
              -
              1259  thread_data_index,
              -
              1260  info.thread_var_data_size + info.top_local_thread_size);
              -
              1261  printer->pop_block();
              -
              1262  printer->push_block("else");
              -
              1263  printer->fmt_line("_thread[{}] = {{neuron::container::do_not_search, {}}};",
              -
              1264  thread_data_index,
              -
              1265  static_thread_data);
              -
              1266  printer->fmt_line("{} = 1;", inuse);
              +
              1253 
              +
              1254 void CodegenNeuronCppVisitor::print_thread_memory_callbacks() {
              +
              1255  if (!info.thread_callback_register) {
              +
              1256  return;
              +
              1257  }
              +
              1258 
              +
              1259  auto static_thread_data = get_variable_name("thread_data", false);
              +
              1260  auto inuse = get_variable_name("thread_data_in_use", false);
              +
              1261  auto thread_data_index = info.thread_var_thread_id;
              +
              1262  printer->push_block("static void thread_mem_init(Datum* _thread) ");
              +
              1263  printer->push_block(fmt::format("if({})", inuse));
              +
              1264  printer->fmt_line("_thread[{}] = {{neuron::container::do_not_search, new double[{}]{{}}}};",
              +
              1265  thread_data_index,
              +
              1266  info.thread_var_data_size + info.top_local_thread_size);
              1267  printer->pop_block();
              -
              1268  printer->pop_block();
              -
              1269 
              -
              1270  printer->push_block("static void thread_mem_cleanup(Datum* _thread) ");
              -
              1271  printer->fmt_line("double * _thread_data_ptr = _thread[{}].get<double*>();", thread_data_index);
              -
              1272  printer->push_block(fmt::format("if(_thread_data_ptr == {})", static_thread_data));
              -
              1273  printer->fmt_line("{} = 0;", inuse);
              +
              1268  printer->push_block("else");
              +
              1269  printer->fmt_line("_thread[{}] = {{neuron::container::do_not_search, {}}};",
              +
              1270  thread_data_index,
              +
              1271  static_thread_data);
              +
              1272  printer->fmt_line("{} = 1;", inuse);
              +
              1273  printer->pop_block();
              1274  printer->pop_block();
              -
              1275  printer->push_block("else");
              -
              1276  printer->add_line("delete[] _thread_data_ptr;");
              -
              1277  printer->pop_block();
              -
              1278  printer->pop_block();
              -
              1279 }
              -
              1280 
              -
              1281 
              -
              1282 void CodegenNeuronCppVisitor::print_neuron_global_variable_declarations() {
              -
              1283  for (auto const& [var, type]: info.neuron_global_variables) {
              -
              1284  auto const name = var->get_name();
              -
              1285  printer->fmt_line("extern {} {};", type, name);
              -
              1286  }
              -
              1287 }
              -
              1288 
              -
              1289 void CodegenNeuronCppVisitor::print_mechanism_range_var_structure(bool print_initializers) {
              -
              1290  auto const value_initialize = print_initializers ? "{}" : "";
              -
              1291  printer->add_newline(2);
              -
              1292  printer->add_line("/** all mechanism instance variables and global variables */");
              -
              1293  printer->fmt_push_block("struct {} ", instance_struct());
              +
              1275 
              +
              1276  printer->push_block("static void thread_mem_cleanup(Datum* _thread) ");
              +
              1277  printer->fmt_line("double * _thread_data_ptr = _thread[{}].get<double*>();", thread_data_index);
              +
              1278  printer->push_block(fmt::format("if(_thread_data_ptr == {})", static_thread_data));
              +
              1279  printer->fmt_line("{} = 0;", inuse);
              +
              1280  printer->pop_block();
              +
              1281  printer->push_block("else");
              +
              1282  printer->add_line("delete[] _thread_data_ptr;");
              +
              1283  printer->pop_block();
              +
              1284  printer->pop_block();
              +
              1285 }
              +
              1286 
              +
              1287 
              +
              1288 void CodegenNeuronCppVisitor::print_neuron_global_variable_declarations() {
              +
              1289  for (auto const& [var, type]: info.neuron_global_variables) {
              +
              1290  auto const name = var->get_name();
              +
              1291  printer->fmt_line("extern {} {};", type, name);
              +
              1292  }
              +
              1293 }
              1294 
              -
              1295  for (auto const& [var, type]: info.neuron_global_variables) {
              -
              1296  auto const name = var->get_name();
              -
              1297  printer->fmt_line("{}* {}{};",
              -
              1298  type,
              -
              1299  name,
              -
              1300  print_initializers ? fmt::format("{{&::{}}}", name) : std::string{});
              -
              1301  }
              -
              1302  for (auto& var: codegen_float_variables) {
              -
              1303  const auto& name = var->get_name();
              -
              1304  printer->fmt_line("double* {}{};", name, value_initialize);
              -
              1305  }
              -
              1306  for (auto& var: codegen_int_variables) {
              -
              1307  const auto& name = var.symbol->get_name();
              -
              1308  if (name == naming::POINT_PROCESS_VARIABLE) {
              -
              1309  continue;
              -
              1310  } else if (var.is_index || var.is_integer) {
              -
              1311  // In NEURON we don't create caches for `int*`. Hence, do nothing.
              -
              1312  } else {
              -
              1313  auto qualifier = var.is_constant ? "const " : "";
              -
              1314  auto type = var.is_vdata ? "void*" : default_float_data_type();
              -
              1315  printer->fmt_line("{}{}* const* {}{};", qualifier, type, name, value_initialize);
              -
              1316  }
              -
              1317  }
              -
              1318 
              -
              1319  printer->fmt_line("{}* {}{};",
              -
              1320  global_struct(),
              -
              1321  naming::INST_GLOBAL_MEMBER,
              -
              1322  print_initializers ? fmt::format("{{&{}}}", global_struct_instance())
              -
              1323  : std::string{});
              -
              1324  printer->pop_block(";");
              -
              1325 }
              -
              1326 
              -
              1327 void CodegenNeuronCppVisitor::print_make_instance() const {
              -
              1328  printer->add_newline(2);
              -
              1329  printer->fmt_push_block("static {} make_instance_{}(_nrn_mechanism_cache_range& _lmc)",
              -
              1330  instance_struct(),
              -
              1331  info.mod_suffix);
              -
              1332  printer->fmt_push_block("return {}", instance_struct());
              -
              1333 
              -
              1334  std::vector<std::string> make_instance_args;
              -
              1335 
              -
              1336 
              -
              1337  for (auto const& [var, type]: info.neuron_global_variables) {
              -
              1338  auto const name = var->get_name();
              -
              1339  make_instance_args.push_back(fmt::format("&::{}", name));
              -
              1340  }
              +
              1295 void CodegenNeuronCppVisitor::print_mechanism_range_var_structure(bool print_initializers) {
              +
              1296  auto const value_initialize = print_initializers ? "{}" : "";
              +
              1297  printer->add_newline(2);
              +
              1298  printer->add_line("/** all mechanism instance variables and global variables */");
              +
              1299  printer->fmt_push_block("struct {} ", instance_struct());
              +
              1300 
              +
              1301  for (auto const& [var, type]: info.neuron_global_variables) {
              +
              1302  auto const name = var->get_name();
              +
              1303  printer->fmt_line("{}* {}{};",
              +
              1304  type,
              +
              1305  name,
              +
              1306  print_initializers ? fmt::format("{{&::{}}}", name) : std::string{});
              +
              1307  }
              +
              1308  for (auto& var: codegen_float_variables) {
              +
              1309  const auto& name = var->get_name();
              +
              1310  printer->fmt_line("double* {}{};", name, value_initialize);
              +
              1311  }
              +
              1312  for (auto& var: codegen_int_variables) {
              +
              1313  const auto& name = var.symbol->get_name();
              +
              1314  if (name == naming::POINT_PROCESS_VARIABLE) {
              +
              1315  continue;
              +
              1316  } else if (var.is_index || var.is_integer) {
              +
              1317  // In NEURON we don't create caches for `int*`. Hence, do nothing.
              +
              1318  } else {
              +
              1319  auto qualifier = var.is_constant ? "const " : "";
              +
              1320  auto type = var.is_vdata ? "void*" : default_float_data_type();
              +
              1321  printer->fmt_line("{}{}* const* {}{};", qualifier, type, name, value_initialize);
              +
              1322  }
              +
              1323  }
              +
              1324 
              +
              1325  printer->fmt_line("{}* {}{};",
              +
              1326  global_struct(),
              +
              1327  naming::INST_GLOBAL_MEMBER,
              +
              1328  print_initializers ? fmt::format("{{&{}}}", global_struct_instance())
              +
              1329  : std::string{});
              +
              1330  printer->pop_block(";");
              +
              1331 }
              +
              1332 
              +
              1333 void CodegenNeuronCppVisitor::print_make_instance() const {
              +
              1334  printer->add_newline(2);
              +
              1335  printer->fmt_push_block("static {} make_instance_{}(_nrn_mechanism_cache_range& _lmc)",
              +
              1336  instance_struct(),
              +
              1337  info.mod_suffix);
              +
              1338  printer->fmt_push_block("return {}", instance_struct());
              +
              1339 
              +
              1340  std::vector<std::string> make_instance_args;
              1341 
              1342 
              -
              1343  const auto codegen_float_variables_size = codegen_float_variables.size();
              -
              1344  for (int i = 0; i < codegen_float_variables_size; ++i) {
              -
              1345  const auto& float_var = codegen_float_variables[i];
              -
              1346  if (float_var->is_array()) {
              -
              1347  make_instance_args.push_back(
              -
              1348  fmt::format("_lmc.template data_array_ptr<{}, {}>()", i, float_var->get_length()));
              -
              1349  } else {
              -
              1350  make_instance_args.push_back(fmt::format("_lmc.template fpfield_ptr<{}>()", i));
              -
              1351  }
              -
              1352  }
              -
              1353 
              -
              1354  const auto codegen_int_variables_size = codegen_int_variables.size();
              -
              1355  for (size_t i = 0; i < codegen_int_variables_size; ++i) {
              -
              1356  const auto& var = codegen_int_variables[i];
              -
              1357  auto name = var.symbol->get_name();
              -
              1358  auto const variable = [&var, i]() -> std::string {
              -
              1359  if (var.is_index || var.is_integer) {
              -
              1360  return "";
              -
              1361  } else if (var.is_vdata) {
              -
              1362  return "";
              -
              1363  } else {
              -
              1364  return fmt::format("_lmc.template dptr_field_ptr<{}>()", i);
              -
              1365  }
              -
              1366  }();
              -
              1367  if (variable != "") {
              -
              1368  make_instance_args.push_back(variable);
              -
              1369  }
              -
              1370  }
              -
              1371 
              -
              1372  printer->add_multi_line(fmt::format("{}", fmt::join(make_instance_args, ",\n")));
              -
              1373 
              -
              1374  printer->pop_block(";");
              -
              1375  printer->pop_block();
              -
              1376 }
              +
              1343  for (auto const& [var, type]: info.neuron_global_variables) {
              +
              1344  auto const name = var->get_name();
              +
              1345  make_instance_args.push_back(fmt::format("&::{}", name));
              +
              1346  }
              +
              1347 
              +
              1348 
              +
              1349  const auto codegen_float_variables_size = codegen_float_variables.size();
              +
              1350  for (int i = 0; i < codegen_float_variables_size; ++i) {
              +
              1351  const auto& float_var = codegen_float_variables[i];
              +
              1352  if (float_var->is_array()) {
              +
              1353  make_instance_args.push_back(
              +
              1354  fmt::format("_lmc.template data_array_ptr<{}, {}>()", i, float_var->get_length()));
              +
              1355  } else {
              +
              1356  make_instance_args.push_back(fmt::format("_lmc.template fpfield_ptr<{}>()", i));
              +
              1357  }
              +
              1358  }
              +
              1359 
              +
              1360  const auto codegen_int_variables_size = codegen_int_variables.size();
              +
              1361  for (size_t i = 0; i < codegen_int_variables_size; ++i) {
              +
              1362  const auto& var = codegen_int_variables[i];
              +
              1363  auto name = var.symbol->get_name();
              +
              1364  auto const variable = [&var, i]() -> std::string {
              +
              1365  if (var.is_index || var.is_integer) {
              +
              1366  return "";
              +
              1367  } else if (var.is_vdata) {
              +
              1368  return "";
              +
              1369  } else {
              +
              1370  return fmt::format("_lmc.template dptr_field_ptr<{}>()", i);
              +
              1371  }
              +
              1372  }();
              +
              1373  if (variable != "") {
              +
              1374  make_instance_args.push_back(variable);
              +
              1375  }
              +
              1376  }
              1377 
              -
              1378 void CodegenNeuronCppVisitor::print_node_data_structure(bool print_initializers) {
              -
              1379  printer->add_newline(2);
              -
              1380  printer->fmt_push_block("struct {} ", node_data_struct());
              -
              1381 
              -
              1382  // Pointers to node variables
              -
              1383  printer->add_line("int const * nodeindices;");
              -
              1384  printer->add_line("double const * node_voltages;");
              -
              1385  printer->add_line("double * node_diagonal;");
              -
              1386  printer->add_line("double * node_rhs;");
              -
              1387  printer->add_line("int nodecount;");
              -
              1388 
              -
              1389  printer->pop_block(";");
              -
              1390 }
              -
              1391 
              -
              1392 void CodegenNeuronCppVisitor::print_make_node_data() const {
              -
              1393  printer->add_newline(2);
              -
              1394  printer->fmt_push_block("static {} make_node_data_{}(NrnThread& nt, Memb_list& _ml_arg)",
              -
              1395  node_data_struct(),
              -
              1396  info.mod_suffix);
              +
              1378  printer->add_multi_line(fmt::format("{}", fmt::join(make_instance_args, ",\n")));
              +
              1379 
              +
              1380  printer->pop_block(";");
              +
              1381  printer->pop_block();
              +
              1382 }
              +
              1383 
              +
              1384 void CodegenNeuronCppVisitor::print_node_data_structure(bool print_initializers) {
              +
              1385  printer->add_newline(2);
              +
              1386  printer->fmt_push_block("struct {} ", node_data_struct());
              +
              1387 
              +
              1388  // Pointers to node variables
              +
              1389  printer->add_line("int const * nodeindices;");
              +
              1390  printer->add_line("double const * node_voltages;");
              +
              1391  printer->add_line("double * node_diagonal;");
              +
              1392  printer->add_line("double * node_rhs;");
              +
              1393  printer->add_line("int nodecount;");
              +
              1394 
              +
              1395  printer->pop_block(";");
              +
              1396 }
              1397 
              -
              1398  std::vector<std::string> make_node_data_args = {"_ml_arg.nodeindices",
              -
              1399  "nt.node_voltage_storage()",
              -
              1400  "nt.node_d_storage()",
              -
              1401  "nt.node_rhs_storage()",
              -
              1402  "_ml_arg.nodecount"};
              +
              1398 void CodegenNeuronCppVisitor::print_make_node_data() const {
              +
              1399  printer->add_newline(2);
              +
              1400  printer->fmt_push_block("static {} make_node_data_{}(NrnThread& nt, Memb_list& _ml_arg)",
              +
              1401  node_data_struct(),
              +
              1402  info.mod_suffix);
              1403 
              -
              1404  printer->fmt_push_block("return {}", node_data_struct());
              -
              1405  printer->add_multi_line(fmt::format("{}", fmt::join(make_node_data_args, ",\n")));
              -
              1406 
              -
              1407  printer->pop_block(";");
              -
              1408  printer->pop_block();
              +
              1404  std::vector<std::string> make_node_data_args = {"_ml_arg.nodeindices",
              +
              1405  "nt.node_voltage_storage()",
              +
              1406  "nt.node_d_storage()",
              +
              1407  "nt.node_rhs_storage()",
              +
              1408  "_ml_arg.nodecount"};
              1409 
              -
              1410 
              -
              1411  printer->fmt_push_block("static {} make_node_data_{}(Prop * _prop)",
              -
              1412  node_data_struct(),
              -
              1413  info.mod_suffix);
              -
              1414  printer->add_line("static std::vector<int> node_index{0};");
              -
              1415  printer->add_line("Node* _node = _nrn_mechanism_access_node(_prop);");
              +
              1410  printer->fmt_push_block("return {}", node_data_struct());
              +
              1411  printer->add_multi_line(fmt::format("{}", fmt::join(make_node_data_args, ",\n")));
              +
              1412 
              +
              1413  printer->pop_block(";");
              +
              1414  printer->pop_block();
              +
              1415 
              1416 
              -
              1417  make_node_data_args = {"node_index.data()",
              -
              1418  "&_nrn_mechanism_access_voltage(_node)",
              -
              1419  "&_nrn_mechanism_access_d(_node)",
              -
              1420  "&_nrn_mechanism_access_rhs(_node)",
              -
              1421  "1"};
              +
              1417  printer->fmt_push_block("static {} make_node_data_{}(Prop * _prop)",
              +
              1418  node_data_struct(),
              +
              1419  info.mod_suffix);
              +
              1420  printer->add_line("static std::vector<int> node_index{0};");
              +
              1421  printer->add_line("Node* _node = _nrn_mechanism_access_node(_prop);");
              1422 
              -
              1423  printer->fmt_push_block("return {}", node_data_struct());
              -
              1424  printer->add_multi_line(fmt::format("{}", fmt::join(make_node_data_args, ",\n")));
              -
              1425 
              -
              1426  printer->pop_block(";");
              -
              1427  printer->pop_block();
              -
              1428  printer->add_newline();
              -
              1429 }
              -
              1430 
              -
              1431 void CodegenNeuronCppVisitor::print_thread_variables_structure(bool print_initializers) {
              -
              1432  if (codegen_thread_variables.empty()) {
              -
              1433  return;
              -
              1434  }
              -
              1435 
              -
              1436  printer->add_newline(2);
              -
              1437  printer->fmt_push_block("struct {} ", thread_variables_struct());
              -
              1438  printer->add_line("double * thread_data;");
              -
              1439  printer->add_newline();
              -
              1440 
              -
              1441  std::string simd_width = "1";
              -
              1442 
              -
              1443 
              -
              1444  for (const auto& var_info: codegen_thread_variables) {
              -
              1445  printer->fmt_push_block("double * {}_ptr(size_t id)", var_info.symbol->get_name());
              -
              1446  printer->fmt_line("return thread_data + {} + (id % {});", var_info.offset, simd_width);
              -
              1447  printer->pop_block();
              +
              1423  make_node_data_args = {"node_index.data()",
              +
              1424  "&_nrn_mechanism_access_voltage(_node)",
              +
              1425  "&_nrn_mechanism_access_d(_node)",
              +
              1426  "&_nrn_mechanism_access_rhs(_node)",
              +
              1427  "1"};
              +
              1428 
              +
              1429  printer->fmt_push_block("return {}", node_data_struct());
              +
              1430  printer->add_multi_line(fmt::format("{}", fmt::join(make_node_data_args, ",\n")));
              +
              1431 
              +
              1432  printer->pop_block(";");
              +
              1433  printer->pop_block();
              +
              1434  printer->add_newline();
              +
              1435 }
              +
              1436 
              +
              1437 void CodegenNeuronCppVisitor::print_thread_variables_structure(bool print_initializers) {
              +
              1438  if (codegen_thread_variables.empty()) {
              +
              1439  return;
              +
              1440  }
              +
              1441 
              +
              1442  printer->add_newline(2);
              +
              1443  printer->fmt_push_block("struct {} ", thread_variables_struct());
              +
              1444  printer->add_line("double * thread_data;");
              +
              1445  printer->add_newline();
              +
              1446 
              +
              1447  std::string simd_width = "1";
              1448 
              -
              1449  printer->fmt_push_block("double & {}(size_t id)", var_info.symbol->get_name());
              -
              1450  printer->fmt_line("return thread_data[{} + (id % {})];", var_info.offset, simd_width);
              -
              1451  printer->pop_block();
              -
              1452  }
              -
              1453  printer->add_newline();
              +
              1449 
              +
              1450  for (const auto& var_info: codegen_thread_variables) {
              +
              1451  printer->fmt_push_block("double * {}_ptr(size_t id)", var_info.symbol->get_name());
              +
              1452  printer->fmt_line("return thread_data + {} + (id % {});", var_info.offset, simd_width);
              +
              1453  printer->pop_block();
              1454 
              -
              1455  printer->push_block(fmt::format("{}(double * const thread_data)", thread_variables_struct()));
              -
              1456  printer->fmt_line("this->thread_data = thread_data;");
              -
              1457  printer->pop_block();
              -
              1458 
              -
              1459  printer->pop_block(";");
              -
              1460 }
              -
              1461 
              -
              1462 
              -
              1463 void CodegenNeuronCppVisitor::print_initial_block(const InitialBlock* node) {
              -
              1464  // read ion statements
              -
              1465  auto read_statements = ion_read_statements(BlockType::Initial);
              -
              1466  for (auto& statement: read_statements) {
              -
              1467  printer->add_line(statement);
              -
              1468  }
              -
              1469 
              -
              1470  // initial block
              -
              1471  if (node != nullptr) {
              -
              1472  const auto& block = node->get_statement_block();
              -
              1473  print_statement_block(*block, false, false);
              +
              1455  printer->fmt_push_block("double & {}(size_t id)", var_info.symbol->get_name());
              +
              1456  printer->fmt_line("return thread_data[{} + (id % {})];", var_info.offset, simd_width);
              +
              1457  printer->pop_block();
              +
              1458  }
              +
              1459  printer->add_newline();
              +
              1460 
              +
              1461  printer->push_block(fmt::format("{}(double * const thread_data)", thread_variables_struct()));
              +
              1462  printer->fmt_line("this->thread_data = thread_data;");
              +
              1463  printer->pop_block();
              +
              1464 
              +
              1465  printer->pop_block(";");
              +
              1466 }
              +
              1467 
              +
              1468 
              +
              1469 void CodegenNeuronCppVisitor::print_initial_block(const InitialBlock* node) {
              +
              1470  // read ion statements
              +
              1471  auto read_statements = ion_read_statements(BlockType::Initial);
              +
              1472  for (auto& statement: read_statements) {
              +
              1473  printer->add_line(statement);
              1474  }
              1475 
              -
              1476  // write ion statements
              -
              1477  auto write_statements = ion_write_statements(BlockType::Initial);
              -
              1478  for (auto& statement: write_statements) {
              -
              1479  auto text = process_shadow_update_statement(statement, BlockType::Initial);
              -
              1480  printer->add_line(text);
              -
              1481  }
              -
              1482 }
              -
              1483 
              -
              1484 
              -
              1485 void CodegenNeuronCppVisitor::print_global_function_common_code(BlockType type,
              -
              1486  const std::string& function_name) {
              -
              1487  std::string method = function_name.empty() ? compute_method_name(type) : function_name;
              -
              1488  ParamVector args = {{"", "const _nrn_model_sorted_token&", "", "_sorted_token"},
              -
              1489  {"", "NrnThread*", "", "nt"},
              -
              1490  {"", "Memb_list*", "", "_ml_arg"},
              -
              1491  {"", "int", "", "_type"}};
              -
              1492  printer->fmt_push_block("void {}({})", method, get_parameter_str(args));
              -
              1493 
              -
              1494  printer->add_line("_nrn_mechanism_cache_range _lmc{_sorted_token, *nt, *_ml_arg, _type};");
              -
              1495  printer->fmt_line("auto inst = make_instance_{}(_lmc);", info.mod_suffix);
              -
              1496  printer->fmt_line("auto node_data = make_node_data_{}(*nt, *_ml_arg);", info.mod_suffix);
              -
              1497 
              -
              1498  printer->add_line("auto nodecount = _ml_arg->nodecount;");
              -
              1499  printer->add_line("auto* _thread = _ml_arg->_thread;");
              -
              1500  if (!codegen_thread_variables.empty()) {
              -
              1501  printer->fmt_line("auto _thread_vars = {}(_thread[{}].get<double*>());",
              -
              1502  thread_variables_struct(),
              -
              1503  info.thread_var_thread_id);
              -
              1504  }
              -
              1505 }
              -
              1506 
              -
              1507 
              -
              1508 void CodegenNeuronCppVisitor::print_nrn_init(bool skip_init_check) {
              -
              1509  printer->add_newline(2);
              -
              1510 
              -
              1511  print_global_function_common_code(BlockType::Initial);
              +
              1476  // initial block
              +
              1477  if (node != nullptr) {
              +
              1478  const auto& block = node->get_statement_block();
              +
              1479  print_statement_block(*block, false, false);
              +
              1480  }
              +
              1481 
              +
              1482  // write ion statements
              +
              1483  auto write_statements = ion_write_statements(BlockType::Initial);
              +
              1484  for (auto& statement: write_statements) {
              +
              1485  auto text = process_shadow_update_statement(statement, BlockType::Initial);
              +
              1486  printer->add_line(text);
              +
              1487  }
              +
              1488 }
              +
              1489 
              +
              1490 
              +
              1491 void CodegenNeuronCppVisitor::print_global_function_common_code(BlockType type,
              +
              1492  const std::string& function_name) {
              +
              1493  std::string method = function_name.empty() ? compute_method_name(type) : function_name;
              +
              1494  ParamVector args = {{"", "const _nrn_model_sorted_token&", "", "_sorted_token"},
              +
              1495  {"", "NrnThread*", "", "nt"},
              +
              1496  {"", "Memb_list*", "", "_ml_arg"},
              +
              1497  {"", "int", "", "_type"}};
              +
              1498  printer->fmt_push_block("void {}({})", method, get_parameter_str(args));
              +
              1499 
              +
              1500  printer->add_line("_nrn_mechanism_cache_range _lmc{_sorted_token, *nt, *_ml_arg, _type};");
              +
              1501  printer->fmt_line("auto inst = make_instance_{}(_lmc);", info.mod_suffix);
              +
              1502  printer->fmt_line("auto node_data = make_node_data_{}(*nt, *_ml_arg);", info.mod_suffix);
              +
              1503 
              +
              1504  printer->add_line("auto nodecount = _ml_arg->nodecount;");
              +
              1505  printer->add_line("auto* _thread = _ml_arg->_thread;");
              +
              1506  if (!codegen_thread_variables.empty()) {
              +
              1507  printer->fmt_line("auto _thread_vars = {}(_thread[{}].get<double*>());",
              +
              1508  thread_variables_struct(),
              +
              1509  info.thread_var_thread_id);
              +
              1510  }
              +
              1511 }
              1512 
              -
              1513  printer->push_block("for (int id = 0; id < nodecount; id++)");
              -
              1514 
              -
              1515  printer->add_line("auto* _ppvar = _ml_arg->pdata[id];");
              -
              1516  if (!info.artificial_cell) {
              -
              1517  printer->add_line("int node_id = node_data.nodeindices[id];");
              -
              1518  printer->add_line("auto v = node_data.node_voltages[node_id];");
              -
              1519  }
              +
              1513 
              +
              1514 void CodegenNeuronCppVisitor::print_nrn_init(bool skip_init_check) {
              +
              1515  printer->add_newline(2);
              +
              1516 
              +
              1517  print_global_function_common_code(BlockType::Initial);
              +
              1518 
              +
              1519  printer->push_block("for (int id = 0; id < nodecount; id++)");
              1520 
              -
              1521  print_rename_state_vars();
              -
              1522 
              -
              1523  print_initial_block(info.initial_node);
              -
              1524  printer->pop_block();
              -
              1525 
              -
              1526  printer->pop_block();
              -
              1527 }
              +
              1521  printer->add_line("auto* _ppvar = _ml_arg->pdata[id];");
              +
              1522  if (!info.artificial_cell) {
              +
              1523  printer->add_line("int node_id = node_data.nodeindices[id];");
              +
              1524  printer->add_line("auto v = node_data.node_voltages[node_id];");
              +
              1525  }
              +
              1526 
              +
              1527  print_rename_state_vars();
              1528 
              -
              1529 void CodegenNeuronCppVisitor::print_nrn_jacob() {
              -
              1530  printer->add_newline(2);
              +
              1529  print_initial_block(info.initial_node);
              +
              1530  printer->pop_block();
              1531 
              -
              1532  ParamVector args = {{"", "const _nrn_model_sorted_token&", "", "_sorted_token"},
              -
              1533  {"", "NrnThread*", "", "nt"},
              -
              1534  {"", "Memb_list*", "", "_ml_arg"},
              -
              1535  {"", "int", "", "_type"}};
              -
              1536 
              -
              1537  printer->fmt_push_block("static void {}({})",
              -
              1538  method_name(naming::NRN_JACOB_METHOD),
              -
              1539  get_parameter_str(args)); // begin function
              -
              1540 
              -
              1541 
              -
              1542  printer->add_multi_line(
              -
              1543  "_nrn_mechanism_cache_range _lmc{_sorted_token, *nt, *_ml_arg, _type};");
              -
              1544 
              -
              1545  printer->fmt_line("auto inst = make_instance_{}(_lmc);", info.mod_suffix);
              -
              1546  printer->fmt_line("auto node_data = make_node_data_{}(*nt, *_ml_arg);", info.mod_suffix);
              -
              1547  printer->fmt_line("auto nodecount = _ml_arg->nodecount;");
              -
              1548  printer->push_block("for (int id = 0; id < nodecount; id++)"); // begin for
              -
              1549 
              -
              1550  if (breakpoint_exist()) {
              -
              1551  printer->add_line("int node_id = node_data.nodeindices[id];");
              -
              1552  printer->fmt_line("node_data.node_diagonal[node_id] {} inst.{}[id];",
              -
              1553  operator_for_d(),
              -
              1554  info.vectorize ? naming::CONDUCTANCE_UNUSED_VARIABLE
              -
              1555  : naming::CONDUCTANCE_VARIABLE);
              -
              1556  }
              -
              1557 
              -
              1558  printer->pop_block(); // end for
              -
              1559  printer->pop_block(); // end function
              -
              1560 }
              -
              1561 
              -
              1562 
              -
              1563 /// TODO: Edit for NEURON
              -
              1564 void CodegenNeuronCppVisitor::print_nrn_constructor() {
              -
              1565  return;
              +
              1532  printer->pop_block();
              +
              1533 }
              +
              1534 
              +
              1535 void CodegenNeuronCppVisitor::print_nrn_jacob() {
              +
              1536  printer->add_newline(2);
              +
              1537 
              +
              1538  ParamVector args = {{"", "const _nrn_model_sorted_token&", "", "_sorted_token"},
              +
              1539  {"", "NrnThread*", "", "nt"},
              +
              1540  {"", "Memb_list*", "", "_ml_arg"},
              +
              1541  {"", "int", "", "_type"}};
              +
              1542 
              +
              1543  printer->fmt_push_block("static void {}({})",
              +
              1544  method_name(naming::NRN_JACOB_METHOD),
              +
              1545  get_parameter_str(args)); // begin function
              +
              1546 
              +
              1547 
              +
              1548  printer->add_multi_line(
              +
              1549  "_nrn_mechanism_cache_range _lmc{_sorted_token, *nt, *_ml_arg, _type};");
              +
              1550 
              +
              1551  printer->fmt_line("auto inst = make_instance_{}(_lmc);", info.mod_suffix);
              +
              1552  printer->fmt_line("auto node_data = make_node_data_{}(*nt, *_ml_arg);", info.mod_suffix);
              +
              1553  printer->fmt_line("auto nodecount = _ml_arg->nodecount;");
              +
              1554  printer->push_block("for (int id = 0; id < nodecount; id++)"); // begin for
              +
              1555 
              +
              1556  if (breakpoint_exist()) {
              +
              1557  printer->add_line("int node_id = node_data.nodeindices[id];");
              +
              1558  printer->fmt_line("node_data.node_diagonal[node_id] {} inst.{}[id];",
              +
              1559  operator_for_d(),
              +
              1560  info.vectorize ? naming::CONDUCTANCE_UNUSED_VARIABLE
              +
              1561  : naming::CONDUCTANCE_VARIABLE);
              +
              1562  }
              +
              1563 
              +
              1564  printer->pop_block(); // end for
              +
              1565  printer->pop_block(); // end function
              1566 }
              1567 
              1568 
              -
              1569 void CodegenNeuronCppVisitor::print_nrn_destructor() {
              -
              1570  printer->fmt_push_block("void {}(Prop* _prop)", method_name(naming::NRN_DESTRUCTOR_METHOD));
              -
              1571  printer->add_line("Datum* _ppvar = _nrn_mechanism_access_dparam(_prop);");
              -
              1572 
              -
              1573  for (const auto& rv: info.random_variables) {
              -
              1574  printer->fmt_line("nrnran123_deletestream((nrnran123_State*) {});",
              -
              1575  get_variable_name(get_name(rv), false));
              -
              1576  }
              -
              1577 
              -
              1578  printer->pop_block();
              -
              1579 }
              -
              1580 
              -
              1581 
              -
              1582 void CodegenNeuronCppVisitor::print_nrn_alloc() {
              -
              1583  printer->add_newline(2);
              +
              1569 void CodegenNeuronCppVisitor::print_callable_preamble_from_prop() {
              +
              1570  printer->add_line("Datum* _ppvar = _nrn_mechanism_access_dparam(prop);");
              +
              1571  printer->add_line("_nrn_mechanism_cache_instance _lmc{prop};");
              +
              1572  printer->add_line("const size_t id = 0;");
              +
              1573 
              +
              1574  printer->fmt_line("auto inst = make_instance_{}(_lmc);", info.mod_suffix);
              +
              1575  if (!info.artificial_cell) {
              +
              1576  printer->fmt_line("auto node_data = make_node_data_{}(prop);", info.mod_suffix);
              +
              1577  }
              +
              1578 
              +
              1579  if (!codegen_thread_variables.empty()) {
              +
              1580  printer->fmt_line("auto _thread_vars = {}({}_global.thread_data);",
              +
              1581  thread_variables_struct(),
              +
              1582  info.mod_suffix);
              +
              1583  }
              1584 
              -
              1585  auto method = method_name(naming::NRN_ALLOC_METHOD);
              -
              1586  printer->fmt_push_block("static void {}(Prop* _prop)", method);
              -
              1587  printer->add_line("Datum *_ppvar = nullptr;");
              +
              1585  printer->add_newline();
              +
              1586 }
              +
              1587 
              1588 
              -
              1589  if (info.point_process) {
              -
              1590  printer->push_block("if (nrn_point_prop_)");
              -
              1591  printer->add_multi_line(R"CODE(
              -
              1592  _nrn_mechanism_access_alloc_seq(_prop) = _nrn_mechanism_access_alloc_seq(nrn_point_prop_);
              -
              1593  _ppvar = _nrn_mechanism_access_dparam(nrn_point_prop_);
              -
              1594  )CODE");
              -
              1595  printer->chain_block("else");
              -
              1596  }
              -
              1597  if (info.semantic_variable_count) {
              -
              1598  printer->fmt_line("_ppvar = nrn_prop_datum_alloc(mech_type, {}, _prop);",
              -
              1599  info.semantic_variable_count);
              -
              1600  printer->add_line("_nrn_mechanism_access_dparam(_prop) = _ppvar;");
              -
              1601  }
              -
              1602  printer->add_multi_line(R"CODE(
              -
              1603  _nrn_mechanism_cache_instance _lmc{_prop};
              -
              1604  size_t const _iml = 0;
              -
              1605  )CODE");
              -
              1606  printer->fmt_line("assert(_nrn_mechanism_get_num_vars(_prop) == {});",
              -
              1607  codegen_float_variables.size());
              -
              1608  if (float_variables_size()) {
              -
              1609  printer->add_line("/*initialize range parameters*/");
              -
              1610  for (size_t i_param = 0; i_param < info.range_parameter_vars.size(); ++i_param) {
              -
              1611  const auto var = info.range_parameter_vars[i_param];
              -
              1612  if (var->is_array()) {
              -
              1613  continue;
              -
              1614  }
              -
              1615  const auto& var_name = var->get_name();
              -
              1616  auto var_pos = position_of_float_var(var_name);
              +
              1589 void CodegenNeuronCppVisitor::print_nrn_constructor() {
              +
              1590  if (info.constructor_node) {
              +
              1591  printer->fmt_push_block("void {}(Prop* prop)", method_name(naming::NRN_CONSTRUCTOR_METHOD));
              +
              1592 
              +
              1593  print_callable_preamble_from_prop();
              +
              1594 
              +
              1595  auto block = info.constructor_node->get_statement_block();
              +
              1596  print_statement_block(*block, false, false);
              +
              1597 
              +
              1598  printer->pop_block();
              +
              1599  }
              +
              1600 }
              +
              1601 
              +
              1602 
              +
              1603 void CodegenNeuronCppVisitor::print_nrn_destructor() {
              +
              1604  printer->fmt_push_block("void {}(Prop* prop)", method_name(naming::NRN_DESTRUCTOR_METHOD));
              +
              1605  print_callable_preamble_from_prop();
              +
              1606 
              +
              1607  for (const auto& rv: info.random_variables) {
              +
              1608  printer->fmt_line("nrnran123_deletestream((nrnran123_State*) {});",
              +
              1609  get_variable_name(get_name(rv), false));
              +
              1610  }
              +
              1611 
              +
              1612 
              +
              1613  if (info.destructor_node) {
              +
              1614  auto block = info.destructor_node->get_statement_block();
              +
              1615  print_statement_block(*block, false, false);
              +
              1616  }
              1617 
              -
              1618  printer->fmt_line("_lmc.template fpfield<{}>(_iml) = {}; /* {} */",
              -
              1619  var_pos,
              -
              1620  fmt::format("_parameter_defaults[{}]", i_param),
              -
              1621  var_name);
              -
              1622  }
              -
              1623  }
              -
              1624  if (info.point_process) {
              -
              1625  printer->pop_block();
              -
              1626  }
              -
              1627 
              -
              1628  if (info.semantic_variable_count) {
              -
              1629  printer->add_line("_nrn_mechanism_access_dparam(_prop) = _ppvar;");
              -
              1630  }
              -
              1631 
              -
              1632  const auto codegen_int_variables_size = codegen_int_variables.size();
              -
              1633 
              -
              1634  if (info.diam_used || info.area_used) {
              -
              1635  for (size_t i = 0; i < codegen_int_variables.size(); ++i) {
              -
              1636  auto var_info = codegen_int_variables[i];
              -
              1637  if (var_info.symbol->get_name() == naming::DIAM_VARIABLE) {
              -
              1638  printer->fmt_line("Prop * morphology_prop = need_memb({}._morphology_sym);",
              -
              1639  global_struct_instance());
              -
              1640  printer->fmt_line(
              -
              1641  "_ppvar[{}] = _nrn_mechanism_get_param_handle(morphology_prop, 0);", i);
              -
              1642  }
              -
              1643  if (var_info.symbol->get_name() == naming::AREA_VARIABLE) {
              -
              1644  printer->fmt_line("_ppvar[{}] = _nrn_mechanism_get_area_handle(nrn_alloc_node_);",
              -
              1645  i);
              -
              1646  }
              -
              1647  }
              -
              1648  }
              -
              1649 
              -
              1650  for (const auto& ion: info.ions) {
              -
              1651  printer->fmt_line("Symbol * {}_sym = hoc_lookup(\"{}_ion\");", ion.name, ion.name);
              -
              1652  printer->fmt_line("Prop * {}_prop = need_memb({}_sym);", ion.name, ion.name);
              -
              1653 
              -
              1654  if (ion.is_exterior_conc_written()) {
              -
              1655  printer->fmt_line("nrn_check_conc_write(_prop, {}_prop, 0);", ion.name);
              -
              1656  }
              +
              1618  printer->pop_block();
              +
              1619 }
              +
              1620 
              +
              1621 
              +
              1622 void CodegenNeuronCppVisitor::print_nrn_alloc() {
              +
              1623  printer->add_newline(2);
              +
              1624 
              +
              1625  auto method = method_name(naming::NRN_ALLOC_METHOD);
              +
              1626  printer->fmt_push_block("static void {}(Prop* _prop)", method);
              +
              1627  printer->add_line("Datum *_ppvar = nullptr;");
              +
              1628 
              +
              1629  if (info.point_process) {
              +
              1630  printer->push_block("if (nrn_point_prop_)");
              +
              1631  printer->add_multi_line(R"CODE(
              +
              1632  _nrn_mechanism_access_alloc_seq(_prop) = _nrn_mechanism_access_alloc_seq(nrn_point_prop_);
              +
              1633  _ppvar = _nrn_mechanism_access_dparam(nrn_point_prop_);
              +
              1634  )CODE");
              +
              1635  printer->chain_block("else");
              +
              1636  }
              +
              1637  if (info.semantic_variable_count) {
              +
              1638  printer->fmt_line("_ppvar = nrn_prop_datum_alloc(mech_type, {}, _prop);",
              +
              1639  info.semantic_variable_count);
              +
              1640  printer->add_line("_nrn_mechanism_access_dparam(_prop) = _ppvar;");
              +
              1641  }
              +
              1642  printer->add_multi_line(R"CODE(
              +
              1643  _nrn_mechanism_cache_instance _lmc{_prop};
              +
              1644  size_t const _iml = 0;
              +
              1645  )CODE");
              +
              1646  printer->fmt_line("assert(_nrn_mechanism_get_num_vars(_prop) == {});",
              +
              1647  codegen_float_variables.size());
              +
              1648  if (float_variables_size()) {
              +
              1649  printer->add_line("/*initialize range parameters*/");
              +
              1650  for (size_t i_param = 0; i_param < info.range_parameter_vars.size(); ++i_param) {
              +
              1651  const auto var = info.range_parameter_vars[i_param];
              +
              1652  if (var->is_array()) {
              +
              1653  continue;
              +
              1654  }
              +
              1655  const auto& var_name = var->get_name();
              +
              1656  auto var_pos = position_of_float_var(var_name);
              1657 
              -
              1658  if (ion.is_interior_conc_written()) {
              -
              1659  printer->fmt_line("nrn_check_conc_write(_prop, {}_prop, 1);", ion.name);
              -
              1660  }
              -
              1661 
              -
              1662  int conc = ion.is_conc_written() ? 3 : int(ion.is_conc_read());
              -
              1663  int rev = ion.is_rev_written() ? 3 : int(ion.is_rev_read());
              -
              1664 
              -
              1665  printer->fmt_line("nrn_promote({}_prop, {}, {});", ion.name, conc, rev);
              -
              1666 
              -
              1667  for (size_t i = 0; i < codegen_int_variables_size; ++i) {
              -
              1668  const auto& var = codegen_int_variables[i];
              -
              1669 
              -
              1670  const std::string& var_name = var.symbol->get_name();
              +
              1658  printer->fmt_line("_lmc.template fpfield<{}>(_iml) = {}; /* {} */",
              +
              1659  var_pos,
              +
              1660  fmt::format("_parameter_defaults[{}]", i_param),
              +
              1661  var_name);
              +
              1662  }
              +
              1663  }
              +
              1664  if (info.point_process) {
              +
              1665  printer->pop_block();
              +
              1666  }
              +
              1667 
              +
              1668  if (info.semantic_variable_count) {
              +
              1669  printer->add_line("_nrn_mechanism_access_dparam(_prop) = _ppvar;");
              +
              1670  }
              1671 
              -
              1672  if (stringutils::starts_with(var_name, "ion_")) {
              -
              1673  std::string ion_var_name = std::string(var_name.begin() + 4, var_name.end());
              -
              1674  if (ion.is_ionic_variable(ion_var_name) ||
              -
              1675  ion.is_current_derivative(ion_var_name) || ion.is_rev_potential(ion_var_name)) {
              -
              1676  printer->fmt_line("_ppvar[{}] = _nrn_mechanism_get_param_handle({}_prop, {});",
              -
              1677  i,
              -
              1678  ion.name,
              -
              1679  ion.variable_index(ion_var_name));
              -
              1680  }
              -
              1681  } else {
              -
              1682  if (ion.is_style(var_name)) {
              -
              1683  printer->fmt_line(
              -
              1684  "_ppvar[{}] = {{neuron::container::do_not_search, "
              -
              1685  "&(_nrn_mechanism_access_dparam({}_prop)[0].literal_value<int>())}};",
              -
              1686  i,
              -
              1687  ion.name);
              -
              1688  }
              -
              1689  }
              -
              1690  }
              -
              1691  }
              -
              1692 
              -
              1693  if (!info.random_variables.empty()) {
              -
              1694  for (const auto& rv: info.random_variables) {
              -
              1695  printer->fmt_line("{} = nrnran123_newstream();",
              -
              1696  get_variable_name(get_name(rv), false));
              -
              1697  }
              -
              1698  printer->fmt_line("nrn_mech_inst_destruct[mech_type] = {};",
              -
              1699  method_name(naming::NRN_DESTRUCTOR_METHOD));
              -
              1700  }
              +
              1672  const auto codegen_int_variables_size = codegen_int_variables.size();
              +
              1673 
              +
              1674  if (info.diam_used || info.area_used) {
              +
              1675  for (size_t i = 0; i < codegen_int_variables.size(); ++i) {
              +
              1676  auto var_info = codegen_int_variables[i];
              +
              1677  if (var_info.symbol->get_name() == naming::DIAM_VARIABLE) {
              +
              1678  printer->fmt_line("Prop * morphology_prop = need_memb({}._morphology_sym);",
              +
              1679  global_struct_instance());
              +
              1680  printer->fmt_line(
              +
              1681  "_ppvar[{}] = _nrn_mechanism_get_param_handle(morphology_prop, 0);", i);
              +
              1682  }
              +
              1683  if (var_info.symbol->get_name() == naming::AREA_VARIABLE) {
              +
              1684  printer->fmt_line("_ppvar[{}] = _nrn_mechanism_get_area_handle(nrn_alloc_node_);",
              +
              1685  i);
              +
              1686  }
              +
              1687  }
              +
              1688  }
              +
              1689 
              +
              1690  for (const auto& ion: info.ions) {
              +
              1691  printer->fmt_line("Symbol * {}_sym = hoc_lookup(\"{}_ion\");", ion.name, ion.name);
              +
              1692  printer->fmt_line("Prop * {}_prop = need_memb({}_sym);", ion.name, ion.name);
              +
              1693 
              +
              1694  if (ion.is_exterior_conc_written()) {
              +
              1695  printer->fmt_line("nrn_check_conc_write(_prop, {}_prop, 0);", ion.name);
              +
              1696  }
              +
              1697 
              +
              1698  if (ion.is_interior_conc_written()) {
              +
              1699  printer->fmt_line("nrn_check_conc_write(_prop, {}_prop, 1);", ion.name);
              +
              1700  }
              1701 
              -
              1702  printer->pop_block();
              -
              1703 }
              +
              1702  int conc = ion.is_conc_written() ? 3 : int(ion.is_conc_read());
              +
              1703  int rev = ion.is_rev_written() ? 3 : int(ion.is_rev_read());
              1704 
              -
              1705 
              -
              1706 /****************************************************************************************/
              -
              1707 /* Print nrn_state routine */
              -
              1708 /****************************************************************************************/
              +
              1705  printer->fmt_line("nrn_promote({}_prop, {}, {});", ion.name, conc, rev);
              +
              1706 
              +
              1707  for (size_t i = 0; i < codegen_int_variables_size; ++i) {
              +
              1708  const auto& var = codegen_int_variables[i];
              1709 
              -
              1710 void CodegenNeuronCppVisitor::print_nrn_state() {
              -
              1711  if (!nrn_state_required()) {
              -
              1712  return;
              -
              1713  }
              -
              1714 
              -
              1715  printer->add_newline(2);
              -
              1716  print_global_function_common_code(BlockType::State);
              -
              1717 
              -
              1718  printer->push_block("for (int id = 0; id < nodecount; id++)");
              -
              1719  printer->add_line("int node_id = node_data.nodeindices[id];");
              -
              1720  printer->add_line("auto* _ppvar = _ml_arg->pdata[id];");
              -
              1721  printer->add_line("auto v = node_data.node_voltages[node_id];");
              -
              1722 
              -
              1723  /**
              -
              1724  * \todo Eigen solver node also emits IonCurVar variable in the functor
              -
              1725  * but that shouldn't update ions in derivative block
              -
              1726  */
              -
              1727  if (ion_variable_struct_required()) {
              -
              1728  throw std::runtime_error("Not implemented.");
              -
              1729  }
              -
              1730 
              -
              1731  auto read_statements = ion_read_statements(BlockType::State);
              -
              1732  for (auto& statement: read_statements) {
              -
              1733  printer->add_line(statement);
              -
              1734  }
              -
              1735 
              -
              1736  if (info.nrn_state_block) {
              -
              1737  info.nrn_state_block->visit_children(*this);
              -
              1738  }
              -
              1739 
              -
              1740  if (info.currents.empty() && info.breakpoint_node != nullptr) {
              -
              1741  auto block = info.breakpoint_node->get_statement_block();
              -
              1742  print_statement_block(*block, false, false);
              -
              1743  }
              +
              1710  const std::string& var_name = var.symbol->get_name();
              +
              1711 
              +
              1712  if (stringutils::starts_with(var_name, "ion_")) {
              +
              1713  std::string ion_var_name = std::string(var_name.begin() + 4, var_name.end());
              +
              1714  if (ion.is_ionic_variable(ion_var_name) ||
              +
              1715  ion.is_current_derivative(ion_var_name) || ion.is_rev_potential(ion_var_name)) {
              +
              1716  printer->fmt_line("_ppvar[{}] = _nrn_mechanism_get_param_handle({}_prop, {});",
              +
              1717  i,
              +
              1718  ion.name,
              +
              1719  ion.variable_index(ion_var_name));
              +
              1720  }
              +
              1721  } else {
              +
              1722  if (ion.is_style(var_name)) {
              +
              1723  printer->fmt_line(
              +
              1724  "_ppvar[{}] = {{neuron::container::do_not_search, "
              +
              1725  "&(_nrn_mechanism_access_dparam({}_prop)[0].literal_value<int>())}};",
              +
              1726  i,
              +
              1727  ion.name);
              +
              1728  }
              +
              1729  }
              +
              1730  }
              +
              1731  }
              +
              1732 
              +
              1733  if (!info.random_variables.empty()) {
              +
              1734  for (const auto& rv: info.random_variables) {
              +
              1735  printer->fmt_line("{} = nrnran123_newstream();",
              +
              1736  get_variable_name(get_name(rv), false));
              +
              1737  }
              +
              1738  printer->fmt_line("nrn_mech_inst_destruct[mech_type] = {};",
              +
              1739  method_name(naming::NRN_DESTRUCTOR_METHOD));
              +
              1740  }
              +
              1741 
              +
              1742  if (info.point_process || info.artificial_cell) {
              +
              1743  printer->fmt_push_block("if(!nrn_point_prop_)");
              1744 
              -
              1745  const auto& write_statements = ion_write_statements(BlockType::State);
              -
              1746  for (auto& statement: write_statements) {
              -
              1747  const auto& text = process_shadow_update_statement(statement, BlockType::State);
              -
              1748  printer->add_line(text);
              +
              1745  if (info.constructor_node) {
              +
              1746  printer->fmt_line("{}(_prop);", method_name(naming::NRN_CONSTRUCTOR_METHOD));
              +
              1747  }
              +
              1748  printer->pop_block();
              1749  }
              1750 
              1751  printer->pop_block();
              -
              1752  printer->pop_block();
              -
              1753 }
              +
              1752 }
              +
              1753 
              1754 
              -
              1755 
              -
              1756 /****************************************************************************************/
              -
              1757 /* Print nrn_cur related routines */
              -
              1758 /****************************************************************************************/
              -
              1759 
              -
              1760 std::string CodegenNeuronCppVisitor::nrn_current_arguments() {
              -
              1761  return get_arg_str(nrn_current_parameters());
              -
              1762 }
              +
              1755 /****************************************************************************************/
              +
              1756 /* Print nrn_state routine */
              +
              1757 /****************************************************************************************/
              +
              1758 
              +
              1759 void CodegenNeuronCppVisitor::print_nrn_state() {
              +
              1760  if (!nrn_state_required()) {
              +
              1761  return;
              +
              1762  }
              1763 
              -
              1764 
              -
              1765 CodegenNeuronCppVisitor::ParamVector CodegenNeuronCppVisitor::nrn_current_parameters() {
              -
              1766  if (ion_variable_struct_required()) {
              -
              1767  throw std::runtime_error("Not implemented.");
              -
              1768  }
              -
              1769 
              -
              1770  ParamVector params = {{"", "_nrn_mechanism_cache_range&", "", "_lmc"},
              -
              1771  {"", "NrnThread*", "", "nt"},
              -
              1772  {"", "Datum*", "", "_ppvar"},
              -
              1773  {"", "Datum*", "", "_thread"}};
              -
              1774 
              -
              1775  if (info.thread_callback_register) {
              -
              1776  auto type_name = fmt::format("{}&", thread_variables_struct());
              -
              1777  params.emplace_back("", type_name, "", "_thread_vars");
              +
              1764  printer->add_newline(2);
              +
              1765  print_global_function_common_code(BlockType::State);
              +
              1766 
              +
              1767  printer->push_block("for (int id = 0; id < nodecount; id++)");
              +
              1768  printer->add_line("int node_id = node_data.nodeindices[id];");
              +
              1769  printer->add_line("auto* _ppvar = _ml_arg->pdata[id];");
              +
              1770  printer->add_line("auto v = node_data.node_voltages[node_id];");
              +
              1771 
              +
              1772  /**
              +
              1773  * \todo Eigen solver node also emits IonCurVar variable in the functor
              +
              1774  * but that shouldn't update ions in derivative block
              +
              1775  */
              +
              1776  if (ion_variable_struct_required()) {
              +
              1777  throw std::runtime_error("Not implemented.");
              1778  }
              -
              1779  params.emplace_back("", "size_t", "", "id");
              -
              1780  params.emplace_back("", fmt::format("{}&", instance_struct()), "", "inst");
              -
              1781  params.emplace_back("", fmt::format("{}&", node_data_struct()), "", "node_data");
              -
              1782  params.emplace_back("", "double", "", "v");
              -
              1783  return params;
              -
              1784 }
              -
              1785 
              -
              1786 
              -
              1787 void CodegenNeuronCppVisitor::print_nrn_current(const BreakpointBlock& node) {
              -
              1788  const auto& args = nrn_current_parameters();
              -
              1789  const auto& block = node.get_statement_block();
              -
              1790  printer->add_newline(2);
              -
              1791  printer->fmt_push_block("inline double nrn_current_{}({})",
              -
              1792  info.mod_suffix,
              -
              1793  get_parameter_str(args));
              -
              1794  printer->add_line("double current = 0.0;");
              -
              1795  print_statement_block(*block, false, false);
              -
              1796  for (auto& current: info.currents) {
              -
              1797  const auto& name = get_variable_name(current);
              -
              1798  printer->fmt_line("current += {};", name);
              -
              1799  }
              -
              1800  printer->add_line("return current;");
              +
              1779 
              +
              1780  auto read_statements = ion_read_statements(BlockType::State);
              +
              1781  for (auto& statement: read_statements) {
              +
              1782  printer->add_line(statement);
              +
              1783  }
              +
              1784 
              +
              1785  if (info.nrn_state_block) {
              +
              1786  info.nrn_state_block->visit_children(*this);
              +
              1787  }
              +
              1788 
              +
              1789  if (info.currents.empty() && info.breakpoint_node != nullptr) {
              +
              1790  auto block = info.breakpoint_node->get_statement_block();
              +
              1791  print_statement_block(*block, false, false);
              +
              1792  }
              +
              1793 
              +
              1794  const auto& write_statements = ion_write_statements(BlockType::State);
              +
              1795  for (auto& statement: write_statements) {
              +
              1796  const auto& text = process_shadow_update_statement(statement, BlockType::State);
              +
              1797  printer->add_line(text);
              +
              1798  }
              +
              1799 
              +
              1800  printer->pop_block();
              1801  printer->pop_block();
              1802 }
              1803 
              1804 
              -
              1805 void CodegenNeuronCppVisitor::print_nrn_cur_conductance_kernel(const BreakpointBlock& node) {
              -
              1806  const auto& block = node.get_statement_block();
              -
              1807  print_statement_block(*block, false, false);
              -
              1808  if (!info.currents.empty()) {
              -
              1809  std::string sum;
              -
              1810  for (const auto& current: info.currents) {
              -
              1811  auto var = breakpoint_current(current);
              -
              1812  sum += get_variable_name(var);
              -
              1813  if (&current != &info.currents.back()) {
              -
              1814  sum += "+";
              -
              1815  }
              -
              1816  }
              -
              1817  printer->fmt_line("double rhs = {};", sum);
              -
              1818  }
              -
              1819 
              -
              1820  std::string sum;
              -
              1821  for (const auto& conductance: info.conductances) {
              -
              1822  auto var = breakpoint_current(conductance.variable);
              -
              1823  sum += get_variable_name(var);
              -
              1824  if (&conductance != &info.conductances.back()) {
              -
              1825  sum += "+";
              -
              1826  }
              +
              1805 /****************************************************************************************/
              +
              1806 /* Print nrn_cur related routines */
              +
              1807 /****************************************************************************************/
              +
              1808 
              +
              1809 std::string CodegenNeuronCppVisitor::nrn_current_arguments() {
              +
              1810  return get_arg_str(nrn_current_parameters());
              +
              1811 }
              +
              1812 
              +
              1813 
              +
              1814 CodegenNeuronCppVisitor::ParamVector CodegenNeuronCppVisitor::nrn_current_parameters() {
              +
              1815  if (ion_variable_struct_required()) {
              +
              1816  throw std::runtime_error("Not implemented.");
              +
              1817  }
              +
              1818 
              +
              1819  ParamVector params = {{"", "_nrn_mechanism_cache_range&", "", "_lmc"},
              +
              1820  {"", "NrnThread*", "", "nt"},
              +
              1821  {"", "Datum*", "", "_ppvar"},
              +
              1822  {"", "Datum*", "", "_thread"}};
              +
              1823 
              +
              1824  if (info.thread_callback_register) {
              +
              1825  auto type_name = fmt::format("{}&", thread_variables_struct());
              +
              1826  params.emplace_back("", type_name, "", "_thread_vars");
              1827  }
              -
              1828  printer->fmt_line("double g = {};", sum);
              -
              1829 
              -
              1830  for (const auto& conductance: info.conductances) {
              -
              1831  if (!conductance.ion.empty()) {
              -
              1832  const auto& lhs = std::string(naming::ION_VARNAME_PREFIX) + "di" + conductance.ion +
              -
              1833  "dv";
              -
              1834  const auto& rhs = get_variable_name(conductance.variable);
              -
              1835  const ShadowUseStatement statement{lhs, "+=", rhs};
              -
              1836  const auto& text = process_shadow_update_statement(statement, BlockType::Equation);
              -
              1837  printer->add_line(text);
              -
              1838  }
              -
              1839  }
              -
              1840 }
              -
              1841 
              -
              1842 
              -
              1843 void CodegenNeuronCppVisitor::print_nrn_cur_non_conductance_kernel() {
              -
              1844  printer->fmt_line("double I1 = nrn_current_{}({}+0.001);",
              -
              1845  info.mod_suffix,
              -
              1846  nrn_current_arguments());
              -
              1847  for (auto& ion: info.ions) {
              -
              1848  for (auto& var: ion.writes) {
              -
              1849  if (ion.is_ionic_current(var)) {
              -
              1850  const auto& name = get_variable_name(var);
              -
              1851  printer->fmt_line("double di{} = {};", ion.name, name);
              -
              1852  }
              -
              1853  }
              -
              1854  }
              -
              1855  printer->fmt_line("double I0 = nrn_current_{}({});", info.mod_suffix, nrn_current_arguments());
              -
              1856  printer->add_line("double rhs = I0;");
              -
              1857 
              -
              1858  printer->add_line("double g = (I1-I0)/0.001;");
              -
              1859  for (auto& ion: info.ions) {
              -
              1860  for (auto& var: ion.writes) {
              -
              1861  if (ion.is_ionic_current(var)) {
              -
              1862  const auto& lhs = std::string(naming::ION_VARNAME_PREFIX) + "di" + ion.name + "dv";
              -
              1863  auto rhs = fmt::format("(di{}-{})/0.001", ion.name, get_variable_name(var));
              -
              1864  if (info.point_process) {
              -
              1865  auto area = get_variable_name(naming::NODE_AREA_VARIABLE);
              -
              1866  rhs += fmt::format("*1.e2/{}", area);
              -
              1867  }
              -
              1868  const ShadowUseStatement statement{lhs, "+=", rhs};
              -
              1869  const auto& text = process_shadow_update_statement(statement, BlockType::Equation);
              -
              1870  printer->add_line(text);
              -
              1871  }
              -
              1872  }
              -
              1873  }
              -
              1874 }
              -
              1875 
              -
              1876 
              -
              1877 void CodegenNeuronCppVisitor::print_nrn_cur_kernel(const BreakpointBlock& node) {
              -
              1878  printer->add_line("int node_id = node_data.nodeindices[id];");
              -
              1879  printer->add_line("double v = node_data.node_voltages[node_id];");
              -
              1880  printer->add_line("auto* _ppvar = _ml_arg->pdata[id];");
              -
              1881  const auto& read_statements = ion_read_statements(BlockType::Equation);
              -
              1882  for (auto& statement: read_statements) {
              -
              1883  printer->add_line(statement);
              -
              1884  }
              -
              1885 
              -
              1886  if (info.conductances.empty()) {
              -
              1887  print_nrn_cur_non_conductance_kernel();
              -
              1888  } else {
              -
              1889  print_nrn_cur_conductance_kernel(node);
              -
              1890  }
              +
              1828  params.emplace_back("", "size_t", "", "id");
              +
              1829  params.emplace_back("", fmt::format("{}&", instance_struct()), "", "inst");
              +
              1830  params.emplace_back("", fmt::format("{}&", node_data_struct()), "", "node_data");
              +
              1831  params.emplace_back("", "double", "", "v");
              +
              1832  return params;
              +
              1833 }
              +
              1834 
              +
              1835 
              +
              1836 void CodegenNeuronCppVisitor::print_nrn_current(const BreakpointBlock& node) {
              +
              1837  const auto& args = nrn_current_parameters();
              +
              1838  const auto& block = node.get_statement_block();
              +
              1839  printer->add_newline(2);
              +
              1840  printer->fmt_push_block("inline double nrn_current_{}({})",
              +
              1841  info.mod_suffix,
              +
              1842  get_parameter_str(args));
              +
              1843  printer->add_line("double current = 0.0;");
              +
              1844  print_statement_block(*block, false, false);
              +
              1845  for (auto& current: info.currents) {
              +
              1846  const auto& name = get_variable_name(current);
              +
              1847  printer->fmt_line("current += {};", name);
              +
              1848  }
              +
              1849  printer->add_line("return current;");
              +
              1850  printer->pop_block();
              +
              1851 }
              +
              1852 
              +
              1853 
              +
              1854 void CodegenNeuronCppVisitor::print_nrn_cur_conductance_kernel(const BreakpointBlock& node) {
              +
              1855  const auto& block = node.get_statement_block();
              +
              1856  print_statement_block(*block, false, false);
              +
              1857  if (!info.currents.empty()) {
              +
              1858  std::string sum;
              +
              1859  for (const auto& current: info.currents) {
              +
              1860  auto var = breakpoint_current(current);
              +
              1861  sum += get_variable_name(var);
              +
              1862  if (&current != &info.currents.back()) {
              +
              1863  sum += "+";
              +
              1864  }
              +
              1865  }
              +
              1866  printer->fmt_line("double rhs = {};", sum);
              +
              1867  }
              +
              1868 
              +
              1869  std::string sum;
              +
              1870  for (const auto& conductance: info.conductances) {
              +
              1871  auto var = breakpoint_current(conductance.variable);
              +
              1872  sum += get_variable_name(var);
              +
              1873  if (&conductance != &info.conductances.back()) {
              +
              1874  sum += "+";
              +
              1875  }
              +
              1876  }
              +
              1877  printer->fmt_line("double g = {};", sum);
              +
              1878 
              +
              1879  for (const auto& conductance: info.conductances) {
              +
              1880  if (!conductance.ion.empty()) {
              +
              1881  const auto& lhs = std::string(naming::ION_VARNAME_PREFIX) + "di" + conductance.ion +
              +
              1882  "dv";
              +
              1883  const auto& rhs = get_variable_name(conductance.variable);
              +
              1884  const ShadowUseStatement statement{lhs, "+=", rhs};
              +
              1885  const auto& text = process_shadow_update_statement(statement, BlockType::Equation);
              +
              1886  printer->add_line(text);
              +
              1887  }
              +
              1888  }
              +
              1889 }
              +
              1890 
              1891 
              -
              1892  const auto& write_statements = ion_write_statements(BlockType::Equation);
              -
              1893  for (auto& statement: write_statements) {
              -
              1894  auto text = process_shadow_update_statement(statement, BlockType::Equation);
              -
              1895  printer->add_line(text);
              -
              1896  }
              -
              1897 
              -
              1898  if (info.point_process) {
              -
              1899  const auto& area = get_variable_name(naming::NODE_AREA_VARIABLE);
              -
              1900  printer->fmt_line("double mfactor = 1.e2/{};", area);
              -
              1901  printer->add_line("g = g*mfactor;");
              -
              1902  printer->add_line("rhs = rhs*mfactor;");
              +
              1892 void CodegenNeuronCppVisitor::print_nrn_cur_non_conductance_kernel() {
              +
              1893  printer->fmt_line("double I1 = nrn_current_{}({}+0.001);",
              +
              1894  info.mod_suffix,
              +
              1895  nrn_current_arguments());
              +
              1896  for (auto& ion: info.ions) {
              +
              1897  for (auto& var: ion.writes) {
              +
              1898  if (ion.is_ionic_current(var)) {
              +
              1899  const auto& name = get_variable_name(var);
              +
              1900  printer->fmt_line("double di{} = {};", ion.name, name);
              +
              1901  }
              +
              1902  }
              1903  }
              -
              1904 
              -
              1905  // print_g_unused();
              -
              1906 }
              -
              1907 
              -
              1908 
              -
              1909 /// TODO: Edit for NEURON
              -
              1910 void CodegenNeuronCppVisitor::print_fast_imem_calculation() {
              -
              1911  return;
              -
              1912 }
              -
              1913 
              -
              1914 
              -
              1915 /// TODO: Edit for NEURON
              -
              1916 void CodegenNeuronCppVisitor::print_nrn_cur() {
              -
              1917  if (!nrn_cur_required()) {
              -
              1918  return;
              -
              1919  }
              -
              1920 
              -
              1921  if (info.conductances.empty()) {
              -
              1922  print_nrn_current(*info.breakpoint_node);
              -
              1923  }
              +
              1904  printer->fmt_line("double I0 = nrn_current_{}({});", info.mod_suffix, nrn_current_arguments());
              +
              1905  printer->add_line("double rhs = I0;");
              +
              1906 
              +
              1907  printer->add_line("double g = (I1-I0)/0.001;");
              +
              1908  for (auto& ion: info.ions) {
              +
              1909  for (auto& var: ion.writes) {
              +
              1910  if (ion.is_ionic_current(var)) {
              +
              1911  const auto& lhs = std::string(naming::ION_VARNAME_PREFIX) + "di" + ion.name + "dv";
              +
              1912  auto rhs = fmt::format("(di{}-{})/0.001", ion.name, get_variable_name(var));
              +
              1913  if (info.point_process) {
              +
              1914  auto area = get_variable_name(naming::NODE_AREA_VARIABLE);
              +
              1915  rhs += fmt::format("*1.e2/{}", area);
              +
              1916  }
              +
              1917  const ShadowUseStatement statement{lhs, "+=", rhs};
              +
              1918  const auto& text = process_shadow_update_statement(statement, BlockType::Equation);
              +
              1919  printer->add_line(text);
              +
              1920  }
              +
              1921  }
              +
              1922  }
              +
              1923 }
              1924 
              -
              1925  printer->add_newline(2);
              -
              1926  printer->add_line("/** update current */");
              -
              1927  print_global_function_common_code(BlockType::Equation);
              -
              1928  // print_channel_iteration_block_parallel_hint(BlockType::Equation, info.breakpoint_node);
              -
              1929  printer->push_block("for (int id = 0; id < nodecount; id++)");
              -
              1930  print_nrn_cur_kernel(*info.breakpoint_node);
              -
              1931  // print_nrn_cur_matrix_shadow_update();
              -
              1932  // if (!nrn_cur_reduction_loop_required()) {
              -
              1933  // print_fast_imem_calculation();
              -
              1934  // }
              -
              1935 
              -
              1936 
              -
              1937  printer->fmt_line("node_data.node_rhs[node_id] {} rhs;", operator_for_rhs());
              -
              1938 
              -
              1939  if (breakpoint_exist()) {
              -
              1940  printer->fmt_line("inst.{}[id] = g;",
              -
              1941  info.vectorize ? naming::CONDUCTANCE_UNUSED_VARIABLE
              -
              1942  : naming::CONDUCTANCE_VARIABLE);
              -
              1943  }
              -
              1944  printer->pop_block();
              -
              1945 
              -
              1946  // if (nrn_cur_reduction_loop_required()) {
              -
              1947  // printer->push_block("for (int id = 0; id < nodecount; id++)");
              -
              1948  // print_nrn_cur_matrix_shadow_reduction();
              -
              1949  // printer->pop_block();
              -
              1950  // print_fast_imem_calculation();
              -
              1951  // }
              -
              1952 
              -
              1953  // print_kernel_data_present_annotation_block_end();
              -
              1954  printer->pop_block();
              +
              1925 
              +
              1926 void CodegenNeuronCppVisitor::print_nrn_cur_kernel(const BreakpointBlock& node) {
              +
              1927  printer->add_line("int node_id = node_data.nodeindices[id];");
              +
              1928  printer->add_line("double v = node_data.node_voltages[node_id];");
              +
              1929  printer->add_line("auto* _ppvar = _ml_arg->pdata[id];");
              +
              1930  const auto& read_statements = ion_read_statements(BlockType::Equation);
              +
              1931  for (auto& statement: read_statements) {
              +
              1932  printer->add_line(statement);
              +
              1933  }
              +
              1934 
              +
              1935  if (info.conductances.empty()) {
              +
              1936  print_nrn_cur_non_conductance_kernel();
              +
              1937  } else {
              +
              1938  print_nrn_cur_conductance_kernel(node);
              +
              1939  }
              +
              1940 
              +
              1941  const auto& write_statements = ion_write_statements(BlockType::Equation);
              +
              1942  for (auto& statement: write_statements) {
              +
              1943  auto text = process_shadow_update_statement(statement, BlockType::Equation);
              +
              1944  printer->add_line(text);
              +
              1945  }
              +
              1946 
              +
              1947  if (info.point_process) {
              +
              1948  const auto& area = get_variable_name(naming::NODE_AREA_VARIABLE);
              +
              1949  printer->fmt_line("double mfactor = 1.e2/{};", area);
              +
              1950  printer->add_line("g = g*mfactor;");
              +
              1951  printer->add_line("rhs = rhs*mfactor;");
              +
              1952  }
              +
              1953 
              +
              1954  // print_g_unused();
              1955 }
              1956 
              -
              1957 
              -
              1958 /****************************************************************************************/
              -
              1959 /* Main code printing entry points */
              -
              1960 /****************************************************************************************/
              -
              1961 
              -
              1962 void CodegenNeuronCppVisitor::print_headers_include() {
              -
              1963  print_standard_includes();
              -
              1964  print_neuron_includes();
              -
              1965 
              -
              1966  if (info.thread_callback_register) {
              -
              1967  printer->add_line("extern void _nrn_thread_reg(int, int, void(*)(Datum*));");
              +
              1957 
              +
              1958 /// TODO: Edit for NEURON
              +
              1959 void CodegenNeuronCppVisitor::print_fast_imem_calculation() {
              +
              1960  return;
              +
              1961 }
              +
              1962 
              +
              1963 
              +
              1964 /// TODO: Edit for NEURON
              +
              1965 void CodegenNeuronCppVisitor::print_nrn_cur() {
              +
              1966  if (!nrn_cur_required()) {
              +
              1967  return;
              1968  }
              -
              1969 }
              -
              1970 
              -
              1971 
              -
              1972 void CodegenNeuronCppVisitor::print_macro_definitions() {
              -
              1973  print_global_macros();
              -
              1974  print_mechanism_variables_macros();
              -
              1975 
              -
              1976  printer->add_line("extern Node* nrn_alloc_node_;");
              -
              1977 }
              -
              1978 
              -
              1979 
              -
              1980 void CodegenNeuronCppVisitor::print_global_macros() {
              -
              1981  printer->add_newline();
              -
              1982  printer->add_line("/* NEURON global macro definitions */");
              -
              1983  if (info.vectorize) {
              -
              1984  printer->add_multi_line(R"CODE(
              -
              1985  /* VECTORIZED */
              -
              1986  #define NRN_VECTORIZED 1
              -
              1987  )CODE");
              -
              1988  } else {
              -
              1989  printer->add_multi_line(R"CODE(
              -
              1990  /* NOT VECTORIZED */
              -
              1991  #define NRN_VECTORIZED 0
              -
              1992  )CODE");
              -
              1993  }
              -
              1994 }
              -
              1995 
              -
              1996 
              -
              1997 void CodegenNeuronCppVisitor::print_mechanism_variables_macros() {
              -
              1998  printer->add_newline();
              -
              1999  printer->add_line("static constexpr auto number_of_datum_variables = ",
              -
              2000  std::to_string(int_variables_size()),
              -
              2001  ";");
              -
              2002  printer->add_line("static constexpr auto number_of_floating_point_variables = ",
              -
              2003  std::to_string(codegen_float_variables.size()),
              -
              2004  ";");
              -
              2005  printer->add_newline();
              -
              2006  printer->add_multi_line(R"CODE(
              -
              2007  namespace {
              -
              2008  template <typename T>
              -
              2009  using _nrn_mechanism_std_vector = std::vector<T>;
              -
              2010  using _nrn_model_sorted_token = neuron::model_sorted_token;
              -
              2011  using _nrn_mechanism_cache_range = neuron::cache::MechanismRange<number_of_floating_point_variables, number_of_datum_variables>;
              -
              2012  using _nrn_mechanism_cache_instance = neuron::cache::MechanismInstance<number_of_floating_point_variables, number_of_datum_variables>;
              -
              2013  using _nrn_non_owning_id_without_container = neuron::container::non_owning_identifier_without_container;
              -
              2014  template <typename T>
              -
              2015  using _nrn_mechanism_field = neuron::mechanism::field<T>;
              -
              2016  template <typename... Args>
              -
              2017  void _nrn_mechanism_register_data_fields(Args&&... args) {
              -
              2018  neuron::mechanism::register_data_fields(std::forward<Args>(args)...);
              -
              2019  }
              -
              2020  } // namespace
              -
              2021  )CODE");
              -
              2022 
              -
              2023  if (info.point_process) {
              -
              2024  printer->add_line("extern Prop* nrn_point_prop_;");
              -
              2025  } else {
              -
              2026  printer->add_line("Prop* hoc_getdata_range(int type);");
              -
              2027  }
              -
              2028  // for registration of tables
              -
              2029  if (info.table_count > 0) {
              -
              2030  printer->add_line("void _nrn_thread_table_reg(int, nrn_thread_table_check_t);");
              -
              2031  }
              -
              2032 }
              -
              2033 
              -
              2034 
              -
              2035 void CodegenNeuronCppVisitor::print_data_structures(bool print_initializers) {
              -
              2036  print_mechanism_global_var_structure(print_initializers);
              -
              2037  print_mechanism_range_var_structure(print_initializers);
              -
              2038  print_node_data_structure(print_initializers);
              -
              2039  print_thread_variables_structure(print_initializers);
              -
              2040  print_make_instance();
              -
              2041  print_make_node_data();
              -
              2042 }
              -
              2043 
              -
              2044 
              -
              2045 void CodegenNeuronCppVisitor::print_v_unused() const {
              -
              2046  if (!info.vectorize) {
              -
              2047  return;
              -
              2048  }
              -
              2049  printer->add_multi_line(R"CODE(
              -
              2050  #if NRN_PRCELLSTATE
              -
              2051  inst->v_unused[id] = v;
              -
              2052  #endif
              -
              2053  )CODE");
              -
              2054 }
              -
              2055 
              -
              2056 
              -
              2057 void CodegenNeuronCppVisitor::print_g_unused() const {
              -
              2058  printer->add_multi_line(R"CODE(
              -
              2059  #if NRN_PRCELLSTATE
              -
              2060  inst->g_unused[id] = g;
              -
              2061  #endif
              -
              2062  )CODE");
              -
              2063 }
              -
              2064 
              -
              2065 
              -
              2066 void CodegenNeuronCppVisitor::print_compute_functions() {
              -
              2067  print_hoc_py_wrapper_function_definitions();
              -
              2068  for (const auto& procedure: info.procedures) {
              -
              2069  print_procedure(*procedure);
              -
              2070  }
              -
              2071  for (const auto& function: info.functions) {
              -
              2072  print_function(*function);
              -
              2073  }
              -
              2074  print_nrn_init();
              -
              2075  print_nrn_cur();
              -
              2076  print_nrn_state();
              -
              2077  print_nrn_jacob();
              -
              2078  print_net_receive();
              -
              2079 }
              -
              2080 
              -
              2081 
              -
              2082 void CodegenNeuronCppVisitor::print_codegen_routines() {
              -
              2083  print_backend_info();
              -
              2084  print_headers_include();
              -
              2085  print_macro_definitions();
              -
              2086  print_neuron_global_variable_declarations();
              -
              2087  print_namespace_start();
              -
              2088  print_nmodl_constants();
              -
              2089  print_prcellstate_macros();
              -
              2090  print_mechanism_info();
              -
              2091  print_data_structures(true);
              -
              2092  print_nrn_destructor();
              -
              2093  print_nrn_alloc();
              -
              2094  print_function_prototypes();
              -
              2095  print_functors_definitions();
              -
              2096  print_global_variables_for_hoc();
              -
              2097  print_thread_memory_callbacks();
              -
              2098  print_compute_functions(); // only nrn_cur and nrn_state
              -
              2099  print_sdlists_init(true);
              -
              2100  print_mechanism_register();
              -
              2101  print_namespace_stop();
              -
              2102 }
              -
              2103 
              -
              2104 void CodegenNeuronCppVisitor::print_ion_variable() {
              -
              2105  throw std::runtime_error("Not implemented.");
              -
              2106 }
              -
              2107 
              -
              2108 
              -
              2109 void CodegenNeuronCppVisitor::print_net_send_call(const ast::FunctionCall& node) {
              -
              2110  auto const& arguments = node.get_arguments();
              -
              2111 
              -
              2112  if (printing_net_init) {
              -
              2113  throw std::runtime_error("Not implemented. [jfiwoei]");
              -
              2114  }
              -
              2115 
              -
              2116  std::string weight_pointer = "nullptr";
              -
              2117  auto point_process = get_variable_name(naming::POINT_PROCESS_VARIABLE,
              -
              2118  /* use_instance */ false);
              -
              2119  if (!printing_net_receive) {
              -
              2120  point_process += ".get<Point_process*>()";
              -
              2121  }
              -
              2122  const auto& tqitem = get_variable_name("tqitem", /* use_instance */ false);
              -
              2123 
              -
              2124  printer->fmt_text("{}(/* tqitem */ &{}, {}, {}, {} + ",
              -
              2125  info.artificial_cell ? "artcell_net_send" : "net_send",
              -
              2126  tqitem,
              -
              2127  weight_pointer,
              -
              2128  point_process,
              -
              2129  get_variable_name("t"));
              -
              2130  print_vector_elements(arguments, ", ");
              -
              2131  printer->add_text(')');
              -
              2132 }
              -
              2133 
              -
              2134 void CodegenNeuronCppVisitor::print_net_move_call(const ast::FunctionCall& node) {
              -
              2135  const auto& point_process = get_variable_name("point_process", /* use_instance */ false);
              -
              2136  const auto& tqitem = get_variable_name("tqitem", /* use_instance */ false);
              -
              2137 
              -
              2138  printer->fmt_text("{}(/* tqitem */ &{}, {}, ",
              -
              2139  info.artificial_cell ? "artcell_net_move" : "net_move",
              -
              2140  tqitem,
              -
              2141  point_process);
              -
              2142 
              -
              2143  print_vector_elements(node.get_arguments(), ", ");
              -
              2144  printer->add_text(')');
              -
              2145 }
              -
              2146 
              -
              2147 void CodegenNeuronCppVisitor::print_net_event_call(const ast::FunctionCall& node) {
              -
              2148  const auto& point_process = get_variable_name(naming::POINT_PROCESS_VARIABLE,
              -
              2149  /* use_instance */ false);
              -
              2150  printer->fmt_text("net_event({}, t)", point_process);
              -
              2151 }
              -
              2152 
              -
              2153 /**
              -
              2154  * Rename arguments to NET_RECEIVE block with corresponding pointer variable
              -
              2155  *
              -
              2156  * \code{.mod}
              -
              2157  * NET_RECEIVE (weight, R){
              -
              2158  * x = R
              -
              2159  * }
              -
              2160  * \endcode
              -
              2161  *
              -
              2162  * then generated code should be:
              -
              2163  *
              -
              2164  * \code{.cpp}
              -
              2165  * x[id] = _args[1];
              -
              2166  * \endcode
              -
              2167  *
              -
              2168  * So, the `R` in AST needs to be renamed with `_args[1]`.
              -
              2169  */
              -
              2170 static void rename_net_receive_arguments(const ast::NetReceiveBlock& net_receive_node,
              -
              2171  const ast::Node& node) {
              -
              2172  const auto& parameters = net_receive_node.get_parameters();
              +
              1969 
              +
              1970  if (info.conductances.empty()) {
              +
              1971  print_nrn_current(*info.breakpoint_node);
              +
              1972  }
              +
              1973 
              +
              1974  printer->add_newline(2);
              +
              1975  printer->add_line("/** update current */");
              +
              1976  print_global_function_common_code(BlockType::Equation);
              +
              1977  // print_channel_iteration_block_parallel_hint(BlockType::Equation, info.breakpoint_node);
              +
              1978  printer->push_block("for (int id = 0; id < nodecount; id++)");
              +
              1979  print_nrn_cur_kernel(*info.breakpoint_node);
              +
              1980  // print_nrn_cur_matrix_shadow_update();
              +
              1981  // if (!nrn_cur_reduction_loop_required()) {
              +
              1982  // print_fast_imem_calculation();
              +
              1983  // }
              +
              1984 
              +
              1985 
              +
              1986  printer->fmt_line("node_data.node_rhs[node_id] {} rhs;", operator_for_rhs());
              +
              1987 
              +
              1988  if (breakpoint_exist()) {
              +
              1989  printer->fmt_line("inst.{}[id] = g;",
              +
              1990  info.vectorize ? naming::CONDUCTANCE_UNUSED_VARIABLE
              +
              1991  : naming::CONDUCTANCE_VARIABLE);
              +
              1992  }
              +
              1993  printer->pop_block();
              +
              1994 
              +
              1995  // if (nrn_cur_reduction_loop_required()) {
              +
              1996  // printer->push_block("for (int id = 0; id < nodecount; id++)");
              +
              1997  // print_nrn_cur_matrix_shadow_reduction();
              +
              1998  // printer->pop_block();
              +
              1999  // print_fast_imem_calculation();
              +
              2000  // }
              +
              2001 
              +
              2002  // print_kernel_data_present_annotation_block_end();
              +
              2003  printer->pop_block();
              +
              2004 }
              +
              2005 
              +
              2006 
              +
              2007 /****************************************************************************************/
              +
              2008 /* Main code printing entry points */
              +
              2009 /****************************************************************************************/
              +
              2010 
              +
              2011 void CodegenNeuronCppVisitor::print_headers_include() {
              +
              2012  print_standard_includes();
              +
              2013  print_neuron_includes();
              +
              2014 
              +
              2015  if (info.thread_callback_register) {
              +
              2016  printer->add_line("extern void _nrn_thread_reg(int, int, void(*)(Datum*));");
              +
              2017  }
              +
              2018 }
              +
              2019 
              +
              2020 
              +
              2021 void CodegenNeuronCppVisitor::print_macro_definitions() {
              +
              2022  print_global_macros();
              +
              2023  print_mechanism_variables_macros();
              +
              2024 
              +
              2025  printer->add_line("extern Node* nrn_alloc_node_;");
              +
              2026 }
              +
              2027 
              +
              2028 
              +
              2029 void CodegenNeuronCppVisitor::print_global_macros() {
              +
              2030  printer->add_newline();
              +
              2031  printer->add_line("/* NEURON global macro definitions */");
              +
              2032  if (info.vectorize) {
              +
              2033  printer->add_multi_line(R"CODE(
              +
              2034  /* VECTORIZED */
              +
              2035  #define NRN_VECTORIZED 1
              +
              2036  )CODE");
              +
              2037  } else {
              +
              2038  printer->add_multi_line(R"CODE(
              +
              2039  /* NOT VECTORIZED */
              +
              2040  #define NRN_VECTORIZED 0
              +
              2041  )CODE");
              +
              2042  }
              +
              2043 }
              +
              2044 
              +
              2045 
              +
              2046 void CodegenNeuronCppVisitor::print_mechanism_variables_macros() {
              +
              2047  printer->add_newline();
              +
              2048  printer->add_line("static constexpr auto number_of_datum_variables = ",
              +
              2049  std::to_string(int_variables_size()),
              +
              2050  ";");
              +
              2051  printer->add_line("static constexpr auto number_of_floating_point_variables = ",
              +
              2052  std::to_string(codegen_float_variables.size()),
              +
              2053  ";");
              +
              2054  printer->add_newline();
              +
              2055  printer->add_multi_line(R"CODE(
              +
              2056  namespace {
              +
              2057  template <typename T>
              +
              2058  using _nrn_mechanism_std_vector = std::vector<T>;
              +
              2059  using _nrn_model_sorted_token = neuron::model_sorted_token;
              +
              2060  using _nrn_mechanism_cache_range = neuron::cache::MechanismRange<number_of_floating_point_variables, number_of_datum_variables>;
              +
              2061  using _nrn_mechanism_cache_instance = neuron::cache::MechanismInstance<number_of_floating_point_variables, number_of_datum_variables>;
              +
              2062  using _nrn_non_owning_id_without_container = neuron::container::non_owning_identifier_without_container;
              +
              2063  template <typename T>
              +
              2064  using _nrn_mechanism_field = neuron::mechanism::field<T>;
              +
              2065  template <typename... Args>
              +
              2066  void _nrn_mechanism_register_data_fields(Args&&... args) {
              +
              2067  neuron::mechanism::register_data_fields(std::forward<Args>(args)...);
              +
              2068  }
              +
              2069  } // namespace
              +
              2070  )CODE");
              +
              2071 
              +
              2072  if (info.point_process) {
              +
              2073  printer->add_line("extern Prop* nrn_point_prop_;");
              +
              2074  } else {
              +
              2075  printer->add_line("Prop* hoc_getdata_range(int type);");
              +
              2076  }
              +
              2077  // for registration of tables
              +
              2078  if (info.table_count > 0) {
              +
              2079  printer->add_line("void _nrn_thread_table_reg(int, nrn_thread_table_check_t);");
              +
              2080  }
              +
              2081 }
              +
              2082 
              +
              2083 
              +
              2084 void CodegenNeuronCppVisitor::print_data_structures(bool print_initializers) {
              +
              2085  print_mechanism_global_var_structure(print_initializers);
              +
              2086  print_mechanism_range_var_structure(print_initializers);
              +
              2087  print_node_data_structure(print_initializers);
              +
              2088  print_thread_variables_structure(print_initializers);
              +
              2089  print_make_instance();
              +
              2090  print_make_node_data();
              +
              2091 }
              +
              2092 
              +
              2093 
              +
              2094 void CodegenNeuronCppVisitor::print_v_unused() const {
              +
              2095  if (!info.vectorize) {
              +
              2096  return;
              +
              2097  }
              +
              2098  printer->add_multi_line(R"CODE(
              +
              2099  #if NRN_PRCELLSTATE
              +
              2100  inst->v_unused[id] = v;
              +
              2101  #endif
              +
              2102  )CODE");
              +
              2103 }
              +
              2104 
              +
              2105 
              +
              2106 void CodegenNeuronCppVisitor::print_g_unused() const {
              +
              2107  printer->add_multi_line(R"CODE(
              +
              2108  #if NRN_PRCELLSTATE
              +
              2109  inst->g_unused[id] = g;
              +
              2110  #endif
              +
              2111  )CODE");
              +
              2112 }
              +
              2113 
              +
              2114 
              +
              2115 void CodegenNeuronCppVisitor::print_compute_functions() {
              +
              2116  print_hoc_py_wrapper_function_definitions();
              +
              2117  for (const auto& procedure: info.procedures) {
              +
              2118  print_procedure(*procedure);
              +
              2119  }
              +
              2120  for (const auto& function: info.functions) {
              +
              2121  print_function(*function);
              +
              2122  }
              +
              2123  print_nrn_init();
              +
              2124  print_nrn_cur();
              +
              2125  print_nrn_state();
              +
              2126  print_nrn_jacob();
              +
              2127  print_net_receive();
              +
              2128 }
              +
              2129 
              +
              2130 
              +
              2131 void CodegenNeuronCppVisitor::print_codegen_routines() {
              +
              2132  print_backend_info();
              +
              2133  print_headers_include();
              +
              2134  print_macro_definitions();
              +
              2135  print_neuron_global_variable_declarations();
              +
              2136  print_namespace_start();
              +
              2137  print_nmodl_constants();
              +
              2138  print_prcellstate_macros();
              +
              2139  print_mechanism_info();
              +
              2140  print_data_structures(true);
              +
              2141  print_nrn_constructor();
              +
              2142  print_nrn_destructor();
              +
              2143  print_nrn_alloc();
              +
              2144  print_function_prototypes();
              +
              2145  print_functors_definitions();
              +
              2146  print_global_variables_for_hoc();
              +
              2147  print_thread_memory_callbacks();
              +
              2148  print_compute_functions(); // only nrn_cur and nrn_state
              +
              2149  print_sdlists_init(true);
              +
              2150  print_mechanism_register();
              +
              2151  print_namespace_stop();
              +
              2152 }
              +
              2153 
              +
              2154 void CodegenNeuronCppVisitor::print_ion_variable() {
              +
              2155  throw std::runtime_error("Not implemented.");
              +
              2156 }
              +
              2157 
              +
              2158 
              +
              2159 void CodegenNeuronCppVisitor::print_net_send_call(const ast::FunctionCall& node) {
              +
              2160  auto const& arguments = node.get_arguments();
              +
              2161 
              +
              2162  if (printing_net_init) {
              +
              2163  throw std::runtime_error("Not implemented. [jfiwoei]");
              +
              2164  }
              +
              2165 
              +
              2166  std::string weight_pointer = "nullptr";
              +
              2167  auto point_process = get_variable_name(naming::POINT_PROCESS_VARIABLE,
              +
              2168  /* use_instance */ false);
              +
              2169  if (!printing_net_receive) {
              +
              2170  point_process += ".get<Point_process*>()";
              +
              2171  }
              +
              2172  const auto& tqitem = get_variable_name("tqitem", /* use_instance */ false);
              2173 
              -
              2174  auto n_parameters = parameters.size();
              -
              2175  for (size_t i = 0; i < n_parameters; ++i) {
              -
              2176  const auto& name = parameters[i]->get_node_name();
              -
              2177  auto var_used = VarUsageVisitor().variable_used(node, name);
              -
              2178  if (var_used) {
              -
              2179  RenameVisitor vr(name, fmt::format("_args[{}]", i));
              -
              2180  node.get_statement_block()->visit_children(vr);
              -
              2181  }
              -
              2182  }
              -
              2183 }
              -
              2184 
              -
              2185 void CodegenNeuronCppVisitor::print_net_receive() {
              -
              2186  printing_net_receive = true;
              -
              2187  auto node = info.net_receive_node;
              -
              2188  if (!node) {
              -
              2189  return;
              -
              2190  }
              -
              2191 
              -
              2192  ParamVector args = {{"", "Point_process*", "", "_pnt"},
              -
              2193  {"", "double*", "", "_args"},
              -
              2194  {"", "double", "", "flag"}};
              -
              2195 
              -
              2196  printer->fmt_push_block("static void nrn_net_receive_{}({})",
              -
              2197  info.mod_suffix,
              -
              2198  get_parameter_str(args));
              -
              2199 
              -
              2200  rename_net_receive_arguments(*node, *node);
              -
              2201 
              -
              2202  printer->add_line("_nrn_mechanism_cache_instance _lmc{_pnt->prop};");
              -
              2203  printer->add_line("auto * nt = static_cast<NrnThread*>(_pnt->_vnt);");
              -
              2204  printer->add_line("auto * _ppvar = _nrn_mechanism_access_dparam(_pnt->prop);");
              -
              2205 
              -
              2206  printer->fmt_line("auto inst = make_instance_{}(_lmc);", info.mod_suffix);
              -
              2207  if (!info.artificial_cell) {
              -
              2208  printer->fmt_line("auto node_data = make_node_data_{}(_pnt->prop);", info.mod_suffix);
              -
              2209  }
              -
              2210  printer->fmt_line("// nocmodl has a nullptr dereference for thread variables.");
              -
              2211  printer->fmt_line("// NMODL will fail to compile at a later point, because of");
              -
              2212  printer->fmt_line("// missing '_thread_vars'.");
              -
              2213  printer->fmt_line("Datum * _thread = nullptr;");
              -
              2214 
              -
              2215  printer->add_line("size_t id = 0;");
              -
              2216  printer->add_line("double t = nt->_t;");
              -
              2217 
              -
              2218  print_statement_block(*node->get_statement_block(), false, false);
              -
              2219 
              -
              2220  printer->add_newline();
              -
              2221  printer->pop_block();
              -
              2222  printing_net_receive = false;
              -
              2223 }
              -
              2224 
              -
              2225 
              -
              2226 /****************************************************************************************/
              -
              2227 /* Overloaded visitor routines */
              -
              2228 /****************************************************************************************/
              -
              2229 
              -
              2230 /// TODO: Edit for NEURON
              -
              2231 void CodegenNeuronCppVisitor::visit_watch_statement(const ast::WatchStatement& /* node */) {
              -
              2232  return;
              +
              2174  printer->fmt_text("{}(/* tqitem */ &{}, {}, {}, {} + ",
              +
              2175  info.artificial_cell ? "artcell_net_send" : "net_send",
              +
              2176  tqitem,
              +
              2177  weight_pointer,
              +
              2178  point_process,
              +
              2179  get_variable_name("t"));
              +
              2180  print_vector_elements(arguments, ", ");
              +
              2181  printer->add_text(')');
              +
              2182 }
              +
              2183 
              +
              2184 void CodegenNeuronCppVisitor::print_net_move_call(const ast::FunctionCall& node) {
              +
              2185  const auto& point_process = get_variable_name("point_process", /* use_instance */ false);
              +
              2186  const auto& tqitem = get_variable_name("tqitem", /* use_instance */ false);
              +
              2187 
              +
              2188  printer->fmt_text("{}(/* tqitem */ &{}, {}, ",
              +
              2189  info.artificial_cell ? "artcell_net_move" : "net_move",
              +
              2190  tqitem,
              +
              2191  point_process);
              +
              2192 
              +
              2193  print_vector_elements(node.get_arguments(), ", ");
              +
              2194  printer->add_text(')');
              +
              2195 }
              +
              2196 
              +
              2197 void CodegenNeuronCppVisitor::print_net_event_call(const ast::FunctionCall& node) {
              +
              2198  const auto& point_process = get_variable_name(naming::POINT_PROCESS_VARIABLE,
              +
              2199  /* use_instance */ false);
              +
              2200  printer->fmt_text("net_event({}, t)", point_process);
              +
              2201 }
              +
              2202 
              +
              2203 /**
              +
              2204  * Rename arguments to NET_RECEIVE block with corresponding pointer variable
              +
              2205  *
              +
              2206  * \code{.mod}
              +
              2207  * NET_RECEIVE (weight, R){
              +
              2208  * x = R
              +
              2209  * }
              +
              2210  * \endcode
              +
              2211  *
              +
              2212  * then generated code should be:
              +
              2213  *
              +
              2214  * \code{.cpp}
              +
              2215  * x[id] = _args[1];
              +
              2216  * \endcode
              +
              2217  *
              +
              2218  * So, the `R` in AST needs to be renamed with `_args[1]`.
              +
              2219  */
              +
              2220 static void rename_net_receive_arguments(const ast::NetReceiveBlock& net_receive_node,
              +
              2221  const ast::Node& node) {
              +
              2222  const auto& parameters = net_receive_node.get_parameters();
              +
              2223 
              +
              2224  auto n_parameters = parameters.size();
              +
              2225  for (size_t i = 0; i < n_parameters; ++i) {
              +
              2226  const auto& name = parameters[i]->get_node_name();
              +
              2227  auto var_used = VarUsageVisitor().variable_used(node, name);
              +
              2228  if (var_used) {
              +
              2229  RenameVisitor vr(name, fmt::format("_args[{}]", i));
              +
              2230  node.get_statement_block()->visit_children(vr);
              +
              2231  }
              +
              2232  }
              2233 }
              2234 
              -
              2235 
              -
              2236 } // namespace codegen
              -
              2237 } // namespace nmodl
              +
              2235 void CodegenNeuronCppVisitor::print_net_receive() {
              +
              2236  printing_net_receive = true;
              +
              2237  auto node = info.net_receive_node;
              +
              2238  if (!node) {
              +
              2239  return;
              +
              2240  }
              +
              2241 
              +
              2242  ParamVector args = {{"", "Point_process*", "", "_pnt"},
              +
              2243  {"", "double*", "", "_args"},
              +
              2244  {"", "double", "", "flag"}};
              +
              2245 
              +
              2246  printer->fmt_push_block("static void nrn_net_receive_{}({})",
              +
              2247  info.mod_suffix,
              +
              2248  get_parameter_str(args));
              +
              2249 
              +
              2250  rename_net_receive_arguments(*node, *node);
              +
              2251 
              +
              2252  printer->add_line("_nrn_mechanism_cache_instance _lmc{_pnt->prop};");
              +
              2253  printer->add_line("auto * nt = static_cast<NrnThread*>(_pnt->_vnt);");
              +
              2254  printer->add_line("auto * _ppvar = _nrn_mechanism_access_dparam(_pnt->prop);");
              +
              2255 
              +
              2256  printer->fmt_line("auto inst = make_instance_{}(_lmc);", info.mod_suffix);
              +
              2257  if (!info.artificial_cell) {
              +
              2258  printer->fmt_line("auto node_data = make_node_data_{}(_pnt->prop);", info.mod_suffix);
              +
              2259  }
              +
              2260  printer->fmt_line("// nocmodl has a nullptr dereference for thread variables.");
              +
              2261  printer->fmt_line("// NMODL will fail to compile at a later point, because of");
              +
              2262  printer->fmt_line("// missing '_thread_vars'.");
              +
              2263  printer->fmt_line("Datum * _thread = nullptr;");
              +
              2264 
              +
              2265  printer->add_line("size_t id = 0;");
              +
              2266  printer->add_line("double t = nt->_t;");
              +
              2267 
              +
              2268  print_statement_block(*node->get_statement_block(), false, false);
              +
              2269 
              +
              2270  printer->add_newline();
              +
              2271  printer->pop_block();
              +
              2272  printing_net_receive = false;
              +
              2273 }
              +
              2274 
              +
              2275 
              +
              2276 /****************************************************************************************/
              +
              2277 /* Overloaded visitor routines */
              +
              2278 /****************************************************************************************/
              +
              2279 
              +
              2280 /// TODO: Edit for NEURON
              +
              2281 void CodegenNeuronCppVisitor::visit_watch_statement(const ast::WatchStatement& /* node */) {
              +
              2282  return;
              +
              2283 }
              +
              2284 
              +
              2285 
              +
              2286 } // namespace codegen
              +
              2287 } // namespace nmodl
              nmodl::codegen::naming::RANDOM_SEMANTIC
              static constexpr char RANDOM_SEMANTIC[]
              semantic type for RANDOM variable
              Definition: codegen_naming.hpp:129
              nmodl::stringutils::starts_with
              static bool starts_with(const std::string &haystack, const std::string &needle)
              Check if haystack starts with needle.
              Definition: string_utils.hpp:154
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_destructor
              void print_nrn_destructor() override
              Print nrn_destructor function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1569
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_destructor
              void print_nrn_destructor() override
              Print nrn_destructor function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1603
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_callable_preamble_from_prop
              void print_callable_preamble_from_prop()
              Print the set of common variables from a Prop only.
              Definition: codegen_neuron_cpp_visitor.cpp:1569
              nmodl::ast::Node
              Base class for all AST node.
              Definition: node.hpp:40
              nmodl::codegen::IndexVariableInfo::is_index
              bool is_index
              if this is pure index (e.g.
              Definition: codegen_cpp_visitor.hpp:137
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_non_conductance_kernel
              void print_nrn_cur_non_conductance_kernel() override
              Print the nrn_cur kernel without NMODL conductance keyword provisions.
              Definition: codegen_neuron_cpp_visitor.cpp:1843
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_non_conductance_kernel
              void print_nrn_cur_non_conductance_kernel() override
              Print the nrn_cur kernel without NMODL conductance keyword provisions.
              Definition: codegen_neuron_cpp_visitor.cpp:1892
              nmodl::codegen::CodegenNeuronCppVisitor::py_function_signature
              std::string py_function_signature(const std::string &function_or_procedure_name) const
              Get the signature of the npy <func_or_proc_name> function.
              Definition: codegen_neuron_cpp_visitor.cpp:505
              nmodl::codegen::IndexVariableInfo
              Helper to represent information about index/int variables.
              Definition: codegen_cpp_visitor.hpp:127
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur
              void print_nrn_cur() override
              Print nrn_cur / current update function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1916
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_macro_definitions
              void print_macro_definitions()
              Print all NEURON macros.
              Definition: codegen_neuron_cpp_visitor.cpp:1972
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_net_event_call
              void print_net_event_call(const ast::FunctionCall &node) override
              Print call to net_event.
              Definition: codegen_neuron_cpp_visitor.cpp:2147
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur
              void print_nrn_cur() override
              Print nrn_cur / current update function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1965
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_macro_definitions
              void print_macro_definitions()
              Print all NEURON macros.
              Definition: codegen_neuron_cpp_visitor.cpp:2021
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_net_event_call
              void print_net_event_call(const ast::FunctionCall &node) override
              Print call to net_event.
              Definition: codegen_neuron_cpp_visitor.cpp:2197
              nmodl::codegen::naming::POINT_PROCESS_VARIABLE
              static constexpr char POINT_PROCESS_VARIABLE[]
              inbuilt neuron variable for point process
              Definition: codegen_naming.hpp:69
              nmodl::codegen::CodegenNeuronCppVisitor::print_neuron_includes
              void print_neuron_includes()
              Print includes from NEURON.
              Definition: codegen_neuron_cpp_visitor.cpp:722
              nmodl::codegen::naming::NRN_JACOB_METHOD
              static constexpr char NRN_JACOB_METHOD[]
              nrn_jacob method in generated code
              Definition: codegen_naming.hpp:165
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_init
              void print_nrn_init(bool skip_init_check=true)
              Print the nrn_init function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1508
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_init
              void print_nrn_init(bool skip_init_check=true)
              Print the nrn_init function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1514
              nmodl::codegen::CodegenNeuronCppVisitor::print_hoc_py_wrapper_function_body
              void print_hoc_py_wrapper_function_body(const ast::Block *function_or_procedure_block, InterpreterWrapper wrapper_type)
              Definition: codegen_neuron_cpp_visitor.cpp:282
              nmodl::codegen::CodegenNeuronCppVisitor::internal_method_arguments
              std::string internal_method_arguments() override
              Arguments for functions that are defined and used internally.
              Definition: codegen_neuron_cpp_visitor.cpp:423
              nmodl::codegen::CodegenCppVisitor::SymbolType
              std::shared_ptr< symtab::Symbol > SymbolType
              Definition: codegen_cpp_visitor.hpp:295
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_alloc
              void print_nrn_alloc() override
              Print nrn_alloc function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1582
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_alloc
              void print_nrn_alloc() override
              Print nrn_alloc function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1622
              nmodl::codegen::CodegenNeuronCppVisitor::register_mechanism_arguments
              std::string register_mechanism_arguments() const override
              Arguments for register_mech or point_register_mech function.
              Definition: codegen_neuron_cpp_visitor.cpp:479
              nmodl::codegen::CodegenNeuronCppVisitor::position_of_int_var
              int position_of_int_var(const std::string &name) const override
              Determine the position in the data array for a given int variable.
              Definition: codegen_neuron_cpp_visitor.cpp:69
              nmodl::ast::NetReceiveBlock::get_parameters
              const ArgumentVector & get_parameters() const noexcept override
              Getter for member variable NetReceiveBlock::parameters.
              Definition: net_receive_block.hpp:176
              - +
              nmodl::codegen::CodegenNeuronCppVisitor::table_thread_function_name
              std::string table_thread_function_name() const
              Name of the threaded table checking function.
              Definition: codegen_neuron_cpp_visitor.cpp:55
              nmodl::codegen::CodegenNeuronCppVisitor::optimize_ion_variable_copies
              bool optimize_ion_variable_copies() const override
              Check if ion variable copies should be avoided.
              Definition: codegen_neuron_cpp_visitor.cpp:84
              nmodl::codegen::CodegenNeuronCppVisitor::hoc_function_name
              std::string hoc_function_name(const std::string &function_or_procedure_name) const
              All functions and procedures need a hoc <func_or_proc_name> to be available to the HOC interpreter.
              Definition: codegen_neuron_cpp_visitor.cpp:484
              @@ -2366,34 +2417,35 @@
              nmodl::codegen::CodegenNeuronCppVisitor::global_variable_name
              std::string global_variable_name(const SymbolType &symbol, bool use_instance=true) const override
              Determine the variable name for a global variable given its symbol.
              Definition: codegen_neuron_cpp_visitor.cpp:615
              nmodl::codegen::Ion
              Represent ions used in mod file.
              Definition: codegen_info.hpp:53
              nmodl::codegen::CodegenNeuronCppVisitor::nrn_thread_internal_arguments
              std::string nrn_thread_internal_arguments() override
              Arguments for "_threadargs_" macro in neuron implementation.
              Definition: codegen_neuron_cpp_visitor.cpp:467
              +
              nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
              static constexpr char NRN_CONSTRUCTOR_METHOD[]
              nrn_constructor method in generated code
              Definition: codegen_naming.hpp:144
              codegen_neuron_cpp_visitor.hpp
              Visitor for printing C++ code compatible with legacy api of NEURON
              nmodl::codegen::CodegenNeuronCppVisitor::backend_name
              std::string backend_name() const override
              Name of the code generation backend.
              Definition: codegen_neuron_cpp_visitor.cpp:50
              nmodl::codegen::CodegenNeuronCppVisitor::process_verbatim_text
              std::string process_verbatim_text(std::string const &text) override
              Process a verbatim block for possible variable renaming.
              Definition: codegen_neuron_cpp_visitor.cpp:473
              - +
              nmodl::codegen::CodegenNeuronCppVisitor::print_global_param_default_values
              void print_global_param_default_values()
              Print global struct with default value of RANGE PARAMETERs.
              Definition: codegen_neuron_cpp_visitor.cpp:952
              nmodl::codegen::Ion::name
              std::string name
              name of the ion
              Definition: codegen_info.hpp:55
              nmodl::codegen::naming::NTHREAD_DT_VARIABLE
              static constexpr char NTHREAD_DT_VARIABLE[]
              dt variable in neuron thread structure
              Definition: codegen_naming.hpp:105
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_g_unused
              void print_g_unused() const override
              Set g_unused (conductance) for NRN_PRCELLSTATE feature.
              Definition: codegen_neuron_cpp_visitor.cpp:2057
              -
              nmodl::codegen::CodegenNeuronCppVisitor::visit_watch_statement
              void visit_watch_statement(const ast::WatchStatement &node) override
              TODO: Edit for NEURON.
              Definition: codegen_neuron_cpp_visitor.cpp:2231
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_net_send_call
              void print_net_send_call(const ast::FunctionCall &node) override
              Print call to net_send.
              Definition: codegen_neuron_cpp_visitor.cpp:2109
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_g_unused
              void print_g_unused() const override
              Set g_unused (conductance) for NRN_PRCELLSTATE feature.
              Definition: codegen_neuron_cpp_visitor.cpp:2106
              +
              nmodl::codegen::CodegenNeuronCppVisitor::visit_watch_statement
              void visit_watch_statement(const ast::WatchStatement &node) override
              TODO: Edit for NEURON.
              Definition: codegen_neuron_cpp_visitor.cpp:2281
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_net_send_call
              void print_net_send_call(const ast::FunctionCall &node) override
              Print call to net_send.
              Definition: codegen_neuron_cpp_visitor.cpp:2159
              var_usage_visitor.hpp
              Check if variable is used in given block.
              string_utils.hpp
              Implement string manipulation functions.
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_net_move_call
              void print_net_move_call(const ast::FunctionCall &node) override
              Print call to net_move.
              Definition: codegen_neuron_cpp_visitor.cpp:2134
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_net_move_call
              void print_net_move_call(const ast::FunctionCall &node) override
              Print call to net_move.
              Definition: codegen_neuron_cpp_visitor.cpp:2184
              nmodl::codegen::CodegenNeuronCppVisitor::thread_variable_name
              std::string thread_variable_name(const ThreadVariableInfo &var_info, bool use_instance=true) const
              Determine the C++ string to print for thread variables.
              Definition: codegen_neuron_cpp_visitor.cpp:594
              nmodl::codegen::naming::NODE_AREA_VARIABLE
              static constexpr char NODE_AREA_VARIABLE[]
              inbuilt neuron variable for area of the compartment
              Definition: codegen_naming.hpp:63
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_state
              void print_nrn_state() override
              Print nrn_state / state update function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1710
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_state
              void print_nrn_state() override
              Print nrn_state / state update function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1759
              nmodl::ast::Ast::is_function_block
              virtual bool is_function_block() const noexcept
              Check if the ast node is an instance of ast::FunctionBlock.
              Definition: ast.cpp:142
              nmodl::codegen::naming::NRN_ALLOC_METHOD
              static constexpr char NRN_ALLOC_METHOD[]
              nrn_alloc method in generated code
              Definition: codegen_naming.hpp:156
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_initial_block
              void print_initial_block(const ast::InitialBlock *node)
              Print the initial block.
              Definition: codegen_neuron_cpp_visitor.cpp:1463
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_initial_block
              void print_initial_block(const ast::InitialBlock *node)
              Print the initial block.
              Definition: codegen_neuron_cpp_visitor.cpp:1469
              nmodl::codegen::IndexVariableInfo::is_integer
              bool is_integer
              if this is an integer (e.g.
              Definition: codegen_cpp_visitor.hpp:141
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_global_function_common_code
              void print_global_function_common_code(BlockType type, const std::string &function_name="") override
              Print common code for global functions like nrn_init, nrn_cur and nrn_state.
              Definition: codegen_neuron_cpp_visitor.cpp:1485
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_global_function_common_code
              void print_global_function_common_code(BlockType type, const std::string &function_name="") override
              Print common code for global functions like nrn_init, nrn_cur and nrn_state.
              Definition: codegen_neuron_cpp_visitor.cpp:1491
              nmodl::codegen::CodegenNeuronCppVisitor::float_variable_name
              std::string float_variable_name(const SymbolType &symbol, bool use_instance) const override
              Determine the name of a float variable given its symbol.
              Definition: codegen_neuron_cpp_visitor.cpp:546
              nmodl::codegen::Ion::extra_conc_pointer_name
              std::string extra_conc_pointer_name() const
              Definition: codegen_info.hpp:194
              nmodl::ast::BreakpointBlock::get_statement_block
              std::shared_ptr< StatementBlock > get_statement_block() const noexcept override
              Getter for member variable BreakpointBlock::statement_block.
              Definition: breakpoint_block.hpp:188
              nmodl::codegen::Ion::rev_potential_pointer_name
              std::string rev_potential_pointer_name() const
              Definition: codegen_info.hpp:202
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_v_unused
              void print_v_unused() const override
              Set v_unused (voltage) for NRN_PRCELLSTATE feature.
              Definition: codegen_neuron_cpp_visitor.cpp:2045
              - +
              nmodl::codegen::CodegenNeuronCppVisitor::print_v_unused
              void print_v_unused() const override
              Set v_unused (voltage) for NRN_PRCELLSTATE feature.
              Definition: codegen_neuron_cpp_visitor.cpp:2094
              +
              nmodl::codegen::naming::CONDUCTANCE_VARIABLE
              static constexpr char CONDUCTANCE_VARIABLE[]
              range variable for conductance
              Definition: codegen_naming.hpp:75
              nmodl::codegen::CodegenNeuronCppVisitor::functor_params
              ParamVector functor_params() override
              The parameters of the Newton solver "functor".
              Definition: codegen_neuron_cpp_visitor.cpp:774
              codegen_cpp_visitor.hpp
              Visitor for printing C++ code compatible with legacy api of CoreNEURON
              @@ -2406,62 +2458,62 @@
              nmodl::codegen::BlockType::Equation
              @ Equation
              breakpoint block
              nmodl::codegen::naming::USE_TABLE_VARIABLE
              static constexpr char USE_TABLE_VARIABLE[]
              global variable to indicate if table is used
              Definition: codegen_naming.hpp:78
              nmodl::ast::WatchStatement
              Represent WATCH statement in NMODL.
              Definition: watch_statement.hpp:39
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_neuron_global_variable_declarations
              void print_neuron_global_variable_declarations()
              Print extern declarations for neuron global variables.
              Definition: codegen_neuron_cpp_visitor.cpp:1282
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_neuron_global_variable_declarations
              void print_neuron_global_variable_declarations()
              Print extern declarations for neuron global variables.
              Definition: codegen_neuron_cpp_visitor.cpp:1288
              nmodl::ast::BreakpointBlock
              Represents a BREAKPOINT block in NMODL.
              Definition: breakpoint_block.hpp:53
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_conductance_kernel
              void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
              Print the nrn_cur kernel with NMODL conductance keyword provisions.
              Definition: codegen_neuron_cpp_visitor.cpp:1805
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_conductance_kernel
              void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
              Print the nrn_cur kernel with NMODL conductance keyword provisions.
              Definition: codegen_neuron_cpp_visitor.cpp:1854
              nmodl::codegen::CodegenNeuronCppVisitor::int_variable_name
              std::string int_variable_name(const IndexVariableInfo &symbol, const std::string &name, bool use_instance) const override
              Determine the name of an int variable given its symbol.
              Definition: codegen_neuron_cpp_visitor.cpp:562
              nmodl::codegen::InterpreterWrapper
              InterpreterWrapper
              Enum to switch between HOC and Python wrappers for functions and procedures defined in mechanisms.
              Definition: codegen_neuron_cpp_visitor.hpp:50
              nmodl::codegen::CodegenNeuronCppVisitor::print_global_variables_for_hoc
              void print_global_variables_for_hoc() override
              Print byte arrays that register scalar and vector variables for hoc interface.
              Definition: codegen_neuron_cpp_visitor.cpp:965
              nmodl::codegen::CodegenNeuronCppVisitor::print_standard_includes
              void print_standard_includes() override
              Print standard C/C++ includes.
              Definition: codegen_neuron_cpp_visitor.cpp:706
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_range_var_structure
              void print_mechanism_range_var_structure(bool print_initializers) override
              Print the structure that wraps all range and int variables required for the NMODL.
              Definition: codegen_neuron_cpp_visitor.cpp:1289
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_range_var_structure
              void print_mechanism_range_var_structure(bool print_initializers) override
              Print the structure that wraps all range and int variables required for the NMODL.
              Definition: codegen_neuron_cpp_visitor.cpp:1295
              nmodl::codegen::CodegenNeuronCppVisitor::add_variable_tqitem
              void add_variable_tqitem(std::vector< IndexVariableInfo > &variables) override
              Add the variable tqitem during get_int_variables.
              Definition: codegen_neuron_cpp_visitor.cpp:409
              nmodl::codegen::CodegenNeuronCppVisitor::hoc_function_signature
              std::string hoc_function_signature(const std::string &function_or_procedure_name) const
              Get the signature of the hoc <func_or_proc_name> function.
              Definition: codegen_neuron_cpp_visitor.cpp:490
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_thread_variables_structure
              void print_thread_variables_structure(bool print_initializers)
              Print the data structure used to access thread variables.
              Definition: codegen_neuron_cpp_visitor.cpp:1431
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_thread_variables_structure
              void print_thread_variables_structure(bool print_initializers)
              Print the data structure used to access thread variables.
              Definition: codegen_neuron_cpp_visitor.cpp:1437
              nmodl::symtab::syminfo::to_string
              std::string to_string(const T &obj)
              Definition: symbol_properties.hpp:279
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_compute_functions
              void print_compute_functions() override
              Print all compute functions for every backend.
              Definition: codegen_neuron_cpp_visitor.cpp:2066
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_compute_functions
              void print_compute_functions() override
              Print all compute functions for every backend.
              Definition: codegen_neuron_cpp_visitor.cpp:2115
              nmodl::codegen::naming::NRN_INIT_METHOD
              static constexpr char NRN_INIT_METHOD[]
              nrn_init method in generated code
              Definition: codegen_naming.hpp:141
              nmodl::ast::FunctionCall::get_arguments
              const ExpressionVector & get_arguments() const noexcept
              Getter for member variable FunctionCall::arguments.
              Definition: function_call.hpp:166
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_thread_memory_callbacks
              void print_thread_memory_callbacks()
              Print thread variable (de-)initialization functions.
              Definition: codegen_neuron_cpp_visitor.cpp:1248
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_thread_memory_callbacks
              void print_thread_memory_callbacks()
              Print thread variable (de-)initialization functions.
              Definition: codegen_neuron_cpp_visitor.cpp:1254
              nmodl::codegen::rename_net_receive_arguments
              static void rename_net_receive_arguments(const ast::NetReceiveBlock &net_receive_node, const ast::Node &node)
              Rename arguments to NET_RECEIVE block with corresponding pointer variable.
              Definition: codegen_coreneuron_cpp_visitor.cpp:2310
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_kernel
              void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
              Print main body of nrn_cur function.
              Definition: codegen_neuron_cpp_visitor.cpp:1877
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_kernel
              void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
              Print main body of nrn_cur function.
              Definition: codegen_neuron_cpp_visitor.cpp:1926
              nmodl::visitor::RenameVisitor
              Blindly rename given variable to new name
              Definition: rename_visitor.hpp:43
              nmodl::codegen::naming::NRN_CUR_METHOD
              static constexpr char NRN_CUR_METHOD[]
              nrn_cur method in generated code
              Definition: codegen_naming.hpp:162
              nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_register
              void print_mechanism_register() override
              Print the mechanism registration function.
              Definition: codegen_neuron_cpp_visitor.cpp:1082
              codegen_utils.hpp
              Implement utility functions for codegen visitors.
              nmodl::codegen::naming::TQITEM_VARIABLE
              static constexpr char TQITEM_VARIABLE[]
              inbuilt neuron variable for tqitem process
              Definition: codegen_naming.hpp:72
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_jacob
              void print_nrn_jacob()
              Print nrn_jacob function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1529
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_jacob
              void print_nrn_jacob()
              Print nrn_jacob function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1535
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_fast_imem_calculation
              void print_fast_imem_calculation() override
              Print fast membrane current calculation code.
              Definition: codegen_neuron_cpp_visitor.cpp:1910
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_data_structures
              void print_data_structures(bool print_initializers) override
              Print all classes.
              Definition: codegen_neuron_cpp_visitor.cpp:2035
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_fast_imem_calculation
              void print_fast_imem_calculation() override
              Print fast membrane current calculation code.
              Definition: codegen_neuron_cpp_visitor.cpp:1959
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_data_structures
              void print_data_structures(bool print_initializers) override
              Print all classes.
              Definition: codegen_neuron_cpp_visitor.cpp:2084
              nmodl::codegen::CodegenNeuronCppVisitor::print_sdlists_init
              void print_sdlists_init(bool print_initializers) override
              Definition: codegen_neuron_cpp_visitor.cpp:733
              nmodl::codegen::CodegenNeuronCppVisitor::external_method_arguments
              const std::string external_method_arguments() noexcept override
              Arguments for external functions called from generated code.
              Definition: codegen_neuron_cpp_visitor.cpp:448
              nmodl::codegen::CodegenNeuronCppVisitor::py_function_name
              std::string py_function_name(const std::string &function_or_procedure_name) const
              In non POINT_PROCESS mechanisms all functions and procedures need a py <func_or_proc_name> to be avai...
              Definition: codegen_neuron_cpp_visitor.cpp:499
              nmodl::codegen::ThreadVariableInfo::offset
              size_t offset
              The global variables ahead of this one require offset doubles to store.
              Definition: codegen_neuron_cpp_visitor.hpp:71
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_node_data_structure
              void print_node_data_structure(bool print_initializers)
              Print the structure that wraps all node variables required for the NMODL.
              Definition: codegen_neuron_cpp_visitor.cpp:1378
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_node_data_structure
              void print_node_data_structure(bool print_initializers)
              Print the structure that wraps all node variables required for the NMODL.
              Definition: codegen_neuron_cpp_visitor.cpp:1384
              nmodl::codegen::CppObjectSpecifier::Inline
              @ Inline
              nmodl::codegen::naming::INST_GLOBAL_MEMBER
              static constexpr char INST_GLOBAL_MEMBER[]
              instance struct member pointing to the global variable structure
              Definition: codegen_naming.hpp:99
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_make_instance
              void print_make_instance() const
              Print make_*_instance.
              Definition: codegen_neuron_cpp_visitor.cpp:1327
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_make_instance
              void print_make_instance() const
              Print make_*_instance.
              Definition: codegen_neuron_cpp_visitor.cpp:1333
              nmodl::codegen::CodegenNeuronCppVisitor::print_atomic_reduction_pragma
              void print_atomic_reduction_pragma() override
              Print atomic update pragma for reduction statements.
              Definition: codegen_neuron_cpp_visitor.cpp:80
              nmodl::symtab::syminfo::NmodlType
              NmodlType
              NMODL variable properties.
              Definition: symbol_properties.hpp:116
              nmodl::codegen::CodegenNeuronCppVisitor::print_setdata_functions
              void print_setdata_functions()
              Print NEURON functions related to setting global variables of the mechanism.
              Definition: codegen_neuron_cpp_visitor.cpp:188
              nmodl::codegen::get_name
              std::string get_name(const std::shared_ptr< symtab::Symbol > &sym)
              Definition: codegen_cpp_visitor.hpp:172
              nmodl::codegen::ShadowUseStatement
              Represents ion write statement during code generation.
              Definition: codegen_cpp_visitor.hpp:166
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_variables_macros
              void print_mechanism_variables_macros()
              Print mechanism variables' related macros.
              Definition: codegen_neuron_cpp_visitor.cpp:1997
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_constructor
              void print_nrn_constructor() override
              Print nrn_constructor function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1564
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_variables_macros
              void print_mechanism_variables_macros()
              Print mechanism variables' related macros.
              Definition: codegen_neuron_cpp_visitor.cpp:2046
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_constructor
              void print_nrn_constructor() override
              Print nrn_constructor function definition.
              Definition: codegen_neuron_cpp_visitor.cpp:1589
              nmodl::codegen::CodegenNeuronCppVisitor::print_check_table_function_prototypes
              void print_check_table_function_prototypes()
              Print all check_* function declarations.
              Definition: codegen_neuron_cpp_visitor.cpp:142
              nmodl::codegen::BlockType
              BlockType
              Helper to represent various block types.
              Definition: codegen_cpp_visitor.hpp:56
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_headers_include
              void print_headers_include() override
              Print all includes.
              Definition: codegen_neuron_cpp_visitor.cpp:1962
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_headers_include
              void print_headers_include() override
              Print all includes.
              Definition: codegen_neuron_cpp_visitor.cpp:2011
              nmodl::codegen::CodegenNeuronCppVisitor::external_method_parameters
              const ParamVector external_method_parameters(bool table=false) noexcept override
              Parameters for functions in generated code that are called back from external code.
              Definition: codegen_neuron_cpp_visitor.cpp:454
              nmodl::codegen::CodegenNeuronCppVisitor::print_function_or_procedure
              void print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers={ CppObjectSpecifier::Inline}) override
              Print nmodl function or procedure (common code)
              Definition: codegen_neuron_cpp_visitor.cpp:240
              nmodl::codegen::naming::NRN_STATE_METHOD
              static constexpr char NRN_STATE_METHOD[]
              nrn_state method in generated code
              Definition: codegen_naming.hpp:159
              nmodl::codegen::ThreadVariableInfo::symbol
              const std::shared_ptr< symtab::Symbol > symbol
              Definition: codegen_neuron_cpp_visitor.hpp:61
              config.h
              Version information and units file path.
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_current
              void print_nrn_current(const ast::BreakpointBlock &node) override
              Print the nrn_current kernel.
              Definition: codegen_neuron_cpp_visitor.cpp:1787
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_current
              void print_nrn_current(const ast::BreakpointBlock &node) override
              Print the nrn_current kernel.
              Definition: codegen_neuron_cpp_visitor.cpp:1836
              nmodl::codegen::CodegenNeuronCppVisitor::position_of_float_var
              int position_of_float_var(const std::string &name) const override
              Determine the position in the data array for a given float variable.
              Definition: codegen_neuron_cpp_visitor.cpp:64
              nmodl::codegen::CodegenNeuronCppVisitor::get_variable_name
              std::string get_variable_name(const std::string &name, bool use_instance=true) const override
              Determine variable name in the structure of mechanism properties.
              Definition: codegen_neuron_cpp_visitor.cpp:625
              nmodl::codegen::naming::AREA_VARIABLE
              static constexpr char AREA_VARIABLE[]
              similar to node_area but user can explicitly declare it as area
              Definition: codegen_naming.hpp:66
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_make_node_data
              void print_make_node_data() const
              Print make_*_node_data.
              Definition: codegen_neuron_cpp_visitor.cpp:1392
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_make_node_data
              void print_make_node_data() const
              Print make_*_node_data.
              Definition: codegen_neuron_cpp_visitor.cpp:1398
              nmodl::ast::Ast::get_statement_block
              virtual std::shared_ptr< StatementBlock > get_statement_block() const
              Return associated statement block for the AST node.
              Definition: ast.cpp:32
              nmodl::codegen::CodegenNeuronCppVisitor::simulator_name
              std::string simulator_name() override
              Name of the simulator the code was generated for.
              Definition: codegen_neuron_cpp_visitor.cpp:45
              nmodl::codegen::CodegenNeuronCppVisitor::print_function_procedure_helper
              void print_function_procedure_helper(const ast::Block &node) override
              Common helper function to help printing function or procedure blocks.
              Definition: codegen_neuron_cpp_visitor.cpp:267
              @@ -2478,7 +2530,7 @@
              nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
              static constexpr char NRN_DESTRUCTOR_METHOD[]
              nrn_destructor method in generated code
              Definition: codegen_naming.hpp:147
              nmodl::codegen::naming::CONDUCTANCE_UNUSED_VARIABLE
              static constexpr char CONDUCTANCE_UNUSED_VARIABLE[]
              range variable when conductance is not used (for vectorized model)
              Definition: codegen_naming.hpp:81
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_codegen_routines
              void print_codegen_routines() override
              Print entry point to code generation.
              Definition: codegen_neuron_cpp_visitor.cpp:2082
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_codegen_routines
              void print_codegen_routines() override
              Print entry point to code generation.
              Definition: codegen_neuron_cpp_visitor.cpp:2131
              nmodl::codegen::BlockType::Initial
              @ Initial
              initial block
              nmodl::codegen::CodegenNeuronCppVisitor::append_conc_write_statements
              void append_conc_write_statements(std::vector< ShadowUseStatement > &statements, const Ion &ion, const std::string &concentration) override
              Generate Function call statement for nrn_wrote_conc.
              Definition: codegen_neuron_cpp_visitor.cpp:520
              nmodl::codegen::naming::NRN_POINTERINDEX
              static constexpr char NRN_POINTERINDEX[]
              hoc_nrnpointerindex name
              Definition: codegen_naming.hpp:180
              @@ -2486,11 +2538,11 @@
              nmodl::codegen::get_index_from_name
              int get_index_from_name(const std::vector< T > &variables, const std::string &name)
              Definition: codegen_cpp_visitor.hpp:181
              nmodl::ast::Ast::get_node_name
              virtual std::string get_node_name() const
              Return name of of the node.
              Definition: ast.cpp:28
              all.hpp
              Auto generated AST classes declaration.
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_net_receive
              void print_net_receive()
              Print net_receive call-back.
              Definition: codegen_neuron_cpp_visitor.cpp:2185
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_net_receive
              void print_net_receive()
              Print net_receive call-back.
              Definition: codegen_neuron_cpp_visitor.cpp:2235
              nmodl::codegen::CodegenNeuronCppVisitor::print_function_prototypes
              void print_function_prototypes() override
              Print function and procedures prototype declaration.
              Definition: codegen_neuron_cpp_visitor.cpp:231
              nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_global_var_structure
              void print_mechanism_global_var_structure(bool print_initializers) override
              Print the structure that wraps all global variables used in the NMODL.
              Definition: codegen_neuron_cpp_visitor.cpp:781
              nmodl::codegen::CodegenNeuronCppVisitor::namespace_name
              std::string namespace_name() override
              Name of "our" namespace.
              Definition: codegen_neuron_cpp_visitor.cpp:515
              -
              nmodl::codegen::CodegenNeuronCppVisitor::print_global_macros
              void print_global_macros()
              Print NEURON global variable macros.
              Definition: codegen_neuron_cpp_visitor.cpp:1980
              +
              nmodl::codegen::CodegenNeuronCppVisitor::print_global_macros
              void print_global_macros()
              Print NEURON global variable macros.
              Definition: codegen_neuron_cpp_visitor.cpp:2029
              nmodl::codegen::Ion::intra_conc_pointer_name
              std::string intra_conc_pointer_name() const
              Definition: codegen_info.hpp:186
              nmodl::codegen::CodegenCppVisitor::ParamVector
              std::vector< std::tuple< std::string, std::string, std::string, std::string > > ParamVector
              A vector of parameters represented by a 4-tuple of strings:
              Definition: codegen_cpp_visitor.hpp:307
              nmodl::codegen::naming::ION_VARNAME_PREFIX
              static constexpr char ION_VARNAME_PREFIX[]
              prefix for ion variable
              Definition: codegen_naming.hpp:177
              diff --git a/notebooks/nmodl-kinetic-schemes.ipynb b/notebooks/nmodl-kinetic-schemes.ipynb index 8b085fbb79..572c55e721 100644 --- a/notebooks/nmodl-kinetic-schemes.ipynb +++ b/notebooks/nmodl-kinetic-schemes.ipynb @@ -152,10 +152,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:00.582323Z", - "iopub.status.busy": "2024-09-11T10:59:00.582127Z", - "iopub.status.idle": "2024-09-11T10:59:01.393231Z", - "shell.execute_reply": "2024-09-11T10:59:01.392436Z" + "iopub.execute_input": "2024-09-11T12:02:06.544480Z", + "iopub.status.busy": "2024-09-11T12:02:06.544270Z", + "iopub.status.idle": "2024-09-11T12:02:07.372881Z", + "shell.execute_reply": "2024-09-11T12:02:07.372093Z" } }, "outputs": [], @@ -169,10 +169,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:01.396266Z", - "iopub.status.busy": "2024-09-11T10:59:01.396050Z", - "iopub.status.idle": "2024-09-11T10:59:01.425878Z", - "shell.execute_reply": "2024-09-11T10:59:01.425234Z" + "iopub.execute_input": "2024-09-11T12:02:07.376119Z", + "iopub.status.busy": "2024-09-11T12:02:07.375866Z", + "iopub.status.idle": "2024-09-11T12:02:07.406175Z", + "shell.execute_reply": "2024-09-11T12:02:07.405287Z" } }, "outputs": [], @@ -277,10 +277,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:01.428647Z", - "iopub.status.busy": "2024-09-11T10:59:01.428438Z", - "iopub.status.idle": "2024-09-11T10:59:01.433174Z", - "shell.execute_reply": "2024-09-11T10:59:01.432536Z" + "iopub.execute_input": "2024-09-11T12:02:07.409371Z", + "iopub.status.busy": "2024-09-11T12:02:07.409109Z", + "iopub.status.idle": "2024-09-11T12:02:07.413915Z", + "shell.execute_reply": "2024-09-11T12:02:07.413281Z" } }, "outputs": [ @@ -323,10 +323,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:01.464862Z", - "iopub.status.busy": "2024-09-11T10:59:01.464312Z", - "iopub.status.idle": "2024-09-11T10:59:01.468442Z", - "shell.execute_reply": "2024-09-11T10:59:01.467709Z" + "iopub.execute_input": "2024-09-11T12:02:07.447203Z", + "iopub.status.busy": "2024-09-11T12:02:07.446596Z", + "iopub.status.idle": "2024-09-11T12:02:07.450838Z", + "shell.execute_reply": "2024-09-11T12:02:07.450186Z" } }, "outputs": [ @@ -367,10 +367,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:01.470971Z", - "iopub.status.busy": "2024-09-11T10:59:01.470513Z", - "iopub.status.idle": "2024-09-11T10:59:01.474373Z", - "shell.execute_reply": "2024-09-11T10:59:01.473707Z" + "iopub.execute_input": "2024-09-11T12:02:07.453380Z", + "iopub.status.busy": "2024-09-11T12:02:07.452985Z", + "iopub.status.idle": "2024-09-11T12:02:07.457042Z", + "shell.execute_reply": "2024-09-11T12:02:07.456327Z" }, "scrolled": true }, @@ -412,10 +412,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:01.477138Z", - "iopub.status.busy": "2024-09-11T10:59:01.476667Z", - "iopub.status.idle": "2024-09-11T10:59:01.480608Z", - "shell.execute_reply": "2024-09-11T10:59:01.479944Z" + "iopub.execute_input": "2024-09-11T12:02:07.459576Z", + "iopub.status.busy": "2024-09-11T12:02:07.459174Z", + "iopub.status.idle": "2024-09-11T12:02:07.463405Z", + "shell.execute_reply": "2024-09-11T12:02:07.462667Z" }, "scrolled": true }, @@ -459,10 +459,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:01.483036Z", - "iopub.status.busy": "2024-09-11T10:59:01.482840Z", - "iopub.status.idle": "2024-09-11T10:59:01.487110Z", - "shell.execute_reply": "2024-09-11T10:59:01.486433Z" + "iopub.execute_input": "2024-09-11T12:02:07.465882Z", + "iopub.status.busy": "2024-09-11T12:02:07.465512Z", + "iopub.status.idle": "2024-09-11T12:02:07.470215Z", + "shell.execute_reply": "2024-09-11T12:02:07.469488Z" } }, "outputs": [ diff --git a/notebooks/nmodl-python-tutorial.ipynb b/notebooks/nmodl-python-tutorial.ipynb index 50804af828..cedeb2d2ce 100644 --- a/notebooks/nmodl-python-tutorial.ipynb +++ b/notebooks/nmodl-python-tutorial.ipynb @@ -30,10 +30,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:06.808115Z", - "iopub.status.busy": "2024-09-11T10:59:06.807690Z", - "iopub.status.idle": "2024-09-11T10:59:07.610695Z", - "shell.execute_reply": "2024-09-11T10:59:07.609821Z" + "iopub.execute_input": "2024-09-11T12:02:12.876662Z", + "iopub.status.busy": "2024-09-11T12:02:12.876456Z", + "iopub.status.idle": "2024-09-11T12:02:13.699457Z", + "shell.execute_reply": "2024-09-11T12:02:13.698638Z" } }, "outputs": [], @@ -63,10 +63,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.614243Z", - "iopub.status.busy": "2024-09-11T10:59:07.613717Z", - "iopub.status.idle": "2024-09-11T10:59:07.641566Z", - "shell.execute_reply": "2024-09-11T10:59:07.640949Z" + "iopub.execute_input": "2024-09-11T12:02:13.702669Z", + "iopub.status.busy": "2024-09-11T12:02:13.702257Z", + "iopub.status.idle": "2024-09-11T12:02:13.731901Z", + "shell.execute_reply": "2024-09-11T12:02:13.731028Z" } }, "outputs": [], @@ -86,10 +86,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.644470Z", - "iopub.status.busy": "2024-09-11T10:59:07.644211Z", - "iopub.status.idle": "2024-09-11T10:59:07.647974Z", - "shell.execute_reply": "2024-09-11T10:59:07.647331Z" + "iopub.execute_input": "2024-09-11T12:02:13.735525Z", + "iopub.status.busy": "2024-09-11T12:02:13.735088Z", + "iopub.status.idle": "2024-09-11T12:02:13.739002Z", + "shell.execute_reply": "2024-09-11T12:02:13.738367Z" } }, "outputs": [], @@ -152,10 +152,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.650344Z", - "iopub.status.busy": "2024-09-11T10:59:07.649984Z", - "iopub.status.idle": "2024-09-11T10:59:07.653759Z", - "shell.execute_reply": "2024-09-11T10:59:07.653137Z" + "iopub.execute_input": "2024-09-11T12:02:13.741522Z", + "iopub.status.busy": "2024-09-11T12:02:13.741127Z", + "iopub.status.idle": "2024-09-11T12:02:13.745093Z", + "shell.execute_reply": "2024-09-11T12:02:13.744417Z" } }, "outputs": [], @@ -183,10 +183,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.656401Z", - "iopub.status.busy": "2024-09-11T10:59:07.656024Z", - "iopub.status.idle": "2024-09-11T10:59:07.659559Z", - "shell.execute_reply": "2024-09-11T10:59:07.658924Z" + "iopub.execute_input": "2024-09-11T12:02:13.748024Z", + "iopub.status.busy": "2024-09-11T12:02:13.747690Z", + "iopub.status.idle": "2024-09-11T12:02:13.751555Z", + "shell.execute_reply": "2024-09-11T12:02:13.750892Z" } }, "outputs": [ @@ -235,10 +235,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.662117Z", - "iopub.status.busy": "2024-09-11T10:59:07.661738Z", - "iopub.status.idle": "2024-09-11T10:59:07.665591Z", - "shell.execute_reply": "2024-09-11T10:59:07.665066Z" + "iopub.execute_input": "2024-09-11T12:02:13.754246Z", + "iopub.status.busy": "2024-09-11T12:02:13.753842Z", + "iopub.status.idle": "2024-09-11T12:02:13.758211Z", + "shell.execute_reply": "2024-09-11T12:02:13.757669Z" } }, "outputs": [], @@ -260,10 +260,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.668022Z", - "iopub.status.busy": "2024-09-11T10:59:07.667560Z", - "iopub.status.idle": "2024-09-11T10:59:07.671184Z", - "shell.execute_reply": "2024-09-11T10:59:07.670561Z" + "iopub.execute_input": "2024-09-11T12:02:13.760808Z", + "iopub.status.busy": "2024-09-11T12:02:13.760401Z", + "iopub.status.idle": "2024-09-11T12:02:13.764232Z", + "shell.execute_reply": "2024-09-11T12:02:13.763564Z" } }, "outputs": [ @@ -297,10 +297,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.673772Z", - "iopub.status.busy": "2024-09-11T10:59:07.673331Z", - "iopub.status.idle": "2024-09-11T10:59:07.680373Z", - "shell.execute_reply": "2024-09-11T10:59:07.679654Z" + "iopub.execute_input": "2024-09-11T12:02:13.766924Z", + "iopub.status.busy": "2024-09-11T12:02:13.766668Z", + "iopub.status.idle": "2024-09-11T12:02:13.774655Z", + "shell.execute_reply": "2024-09-11T12:02:13.773945Z" } }, "outputs": [ @@ -365,10 +365,10 @@ "execution_count": 9, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.682727Z", - "iopub.status.busy": "2024-09-11T10:59:07.682528Z", - "iopub.status.idle": "2024-09-11T10:59:07.686727Z", - "shell.execute_reply": "2024-09-11T10:59:07.686106Z" + "iopub.execute_input": "2024-09-11T12:02:13.777452Z", + "iopub.status.busy": "2024-09-11T12:02:13.777026Z", + "iopub.status.idle": "2024-09-11T12:02:13.781705Z", + "shell.execute_reply": "2024-09-11T12:02:13.780989Z" } }, "outputs": [ @@ -416,10 +416,10 @@ "execution_count": 10, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.689240Z", - "iopub.status.busy": "2024-09-11T10:59:07.688861Z", - "iopub.status.idle": "2024-09-11T10:59:07.692085Z", - "shell.execute_reply": "2024-09-11T10:59:07.691532Z" + "iopub.execute_input": "2024-09-11T12:02:13.784516Z", + "iopub.status.busy": "2024-09-11T12:02:13.784104Z", + "iopub.status.idle": "2024-09-11T12:02:13.787671Z", + "shell.execute_reply": "2024-09-11T12:02:13.787119Z" } }, "outputs": [], @@ -441,10 +441,10 @@ "execution_count": 11, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.694492Z", - "iopub.status.busy": "2024-09-11T10:59:07.694054Z", - "iopub.status.idle": "2024-09-11T10:59:07.697876Z", - "shell.execute_reply": "2024-09-11T10:59:07.697205Z" + "iopub.execute_input": "2024-09-11T12:02:13.790120Z", + "iopub.status.busy": "2024-09-11T12:02:13.789701Z", + "iopub.status.idle": "2024-09-11T12:02:13.793476Z", + "shell.execute_reply": "2024-09-11T12:02:13.792797Z" } }, "outputs": [ @@ -510,10 +510,10 @@ "execution_count": 12, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.700250Z", - "iopub.status.busy": "2024-09-11T10:59:07.699905Z", - "iopub.status.idle": "2024-09-11T10:59:07.703249Z", - "shell.execute_reply": "2024-09-11T10:59:07.702603Z" + "iopub.execute_input": "2024-09-11T12:02:13.795965Z", + "iopub.status.busy": "2024-09-11T12:02:13.795602Z", + "iopub.status.idle": "2024-09-11T12:02:13.798946Z", + "shell.execute_reply": "2024-09-11T12:02:13.798261Z" } }, "outputs": [ @@ -548,10 +548,10 @@ "execution_count": 13, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.705588Z", - "iopub.status.busy": "2024-09-11T10:59:07.705211Z", - "iopub.status.idle": "2024-09-11T10:59:07.708621Z", - "shell.execute_reply": "2024-09-11T10:59:07.707954Z" + "iopub.execute_input": "2024-09-11T12:02:13.801198Z", + "iopub.status.busy": "2024-09-11T12:02:13.800995Z", + "iopub.status.idle": "2024-09-11T12:02:13.804542Z", + "shell.execute_reply": "2024-09-11T12:02:13.803904Z" } }, "outputs": [ @@ -584,10 +584,10 @@ "execution_count": 14, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.711068Z", - "iopub.status.busy": "2024-09-11T10:59:07.710683Z", - "iopub.status.idle": "2024-09-11T10:59:07.714251Z", - "shell.execute_reply": "2024-09-11T10:59:07.713597Z" + "iopub.execute_input": "2024-09-11T12:02:13.807187Z", + "iopub.status.busy": "2024-09-11T12:02:13.806717Z", + "iopub.status.idle": "2024-09-11T12:02:13.810570Z", + "shell.execute_reply": "2024-09-11T12:02:13.809877Z" } }, "outputs": [ @@ -622,10 +622,10 @@ "execution_count": 15, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.716832Z", - "iopub.status.busy": "2024-09-11T10:59:07.716453Z", - "iopub.status.idle": "2024-09-11T10:59:07.720439Z", - "shell.execute_reply": "2024-09-11T10:59:07.719739Z" + "iopub.execute_input": "2024-09-11T12:02:13.812939Z", + "iopub.status.busy": "2024-09-11T12:02:13.812612Z", + "iopub.status.idle": "2024-09-11T12:02:13.817023Z", + "shell.execute_reply": "2024-09-11T12:02:13.816212Z" } }, "outputs": [ @@ -669,10 +669,10 @@ "execution_count": 16, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.722727Z", - "iopub.status.busy": "2024-09-11T10:59:07.722525Z", - "iopub.status.idle": "2024-09-11T10:59:07.728050Z", - "shell.execute_reply": "2024-09-11T10:59:07.727379Z" + "iopub.execute_input": "2024-09-11T12:02:13.820084Z", + "iopub.status.busy": "2024-09-11T12:02:13.819567Z", + "iopub.status.idle": "2024-09-11T12:02:13.825353Z", + "shell.execute_reply": "2024-09-11T12:02:13.824689Z" } }, "outputs": [ @@ -733,10 +733,10 @@ "execution_count": 17, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.730354Z", - "iopub.status.busy": "2024-09-11T10:59:07.730159Z", - "iopub.status.idle": "2024-09-11T10:59:07.733707Z", - "shell.execute_reply": "2024-09-11T10:59:07.733137Z" + "iopub.execute_input": "2024-09-11T12:02:13.828168Z", + "iopub.status.busy": "2024-09-11T12:02:13.827728Z", + "iopub.status.idle": "2024-09-11T12:02:13.831549Z", + "shell.execute_reply": "2024-09-11T12:02:13.830903Z" } }, "outputs": [], @@ -761,10 +761,10 @@ "execution_count": 18, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.735984Z", - "iopub.status.busy": "2024-09-11T10:59:07.735764Z", - "iopub.status.idle": "2024-09-11T10:59:07.745904Z", - "shell.execute_reply": "2024-09-11T10:59:07.745338Z" + "iopub.execute_input": "2024-09-11T12:02:13.833939Z", + "iopub.status.busy": "2024-09-11T12:02:13.833730Z", + "iopub.status.idle": "2024-09-11T12:02:13.844167Z", + "shell.execute_reply": "2024-09-11T12:02:13.843435Z" } }, "outputs": [], @@ -857,10 +857,10 @@ "execution_count": 19, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.748092Z", - "iopub.status.busy": "2024-09-11T10:59:07.747897Z", - "iopub.status.idle": "2024-09-11T10:59:07.751696Z", - "shell.execute_reply": "2024-09-11T10:59:07.751008Z" + "iopub.execute_input": "2024-09-11T12:02:13.847038Z", + "iopub.status.busy": "2024-09-11T12:02:13.846800Z", + "iopub.status.idle": "2024-09-11T12:02:13.850686Z", + "shell.execute_reply": "2024-09-11T12:02:13.849922Z" } }, "outputs": [ @@ -897,10 +897,10 @@ "execution_count": 20, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:07.754234Z", - "iopub.status.busy": "2024-09-11T10:59:07.753840Z", - "iopub.status.idle": "2024-09-11T10:59:07.759285Z", - "shell.execute_reply": "2024-09-11T10:59:07.758617Z" + "iopub.execute_input": "2024-09-11T12:02:13.853672Z", + "iopub.status.busy": "2024-09-11T12:02:13.853162Z", + "iopub.status.idle": "2024-09-11T12:02:13.859082Z", + "shell.execute_reply": "2024-09-11T12:02:13.858408Z" } }, "outputs": [ diff --git a/notebooks/nmodl-sympy-conductance.ipynb b/notebooks/nmodl-sympy-conductance.ipynb index 4bb4682433..b11bb5ec14 100644 --- a/notebooks/nmodl-sympy-conductance.ipynb +++ b/notebooks/nmodl-sympy-conductance.ipynb @@ -86,10 +86,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:10.271179Z", - "iopub.status.busy": "2024-09-11T10:59:10.270768Z", - "iopub.status.idle": "2024-09-11T10:59:11.075670Z", - "shell.execute_reply": "2024-09-11T10:59:11.074854Z" + "iopub.execute_input": "2024-09-11T12:02:16.427105Z", + "iopub.status.busy": "2024-09-11T12:02:16.426623Z", + "iopub.status.idle": "2024-09-11T12:02:17.233646Z", + "shell.execute_reply": "2024-09-11T12:02:17.232872Z" } }, "outputs": [], @@ -103,10 +103,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:11.078856Z", - "iopub.status.busy": "2024-09-11T10:59:11.078468Z", - "iopub.status.idle": "2024-09-11T10:59:11.108199Z", - "shell.execute_reply": "2024-09-11T10:59:11.107535Z" + "iopub.execute_input": "2024-09-11T12:02:17.237177Z", + "iopub.status.busy": "2024-09-11T12:02:17.236689Z", + "iopub.status.idle": "2024-09-11T12:02:17.268495Z", + "shell.execute_reply": "2024-09-11T12:02:17.267785Z" } }, "outputs": [], @@ -149,10 +149,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:11.111198Z", - "iopub.status.busy": "2024-09-11T10:59:11.110639Z", - "iopub.status.idle": "2024-09-11T10:59:11.385966Z", - "shell.execute_reply": "2024-09-11T10:59:11.385185Z" + "iopub.execute_input": "2024-09-11T12:02:17.272122Z", + "iopub.status.busy": "2024-09-11T12:02:17.271633Z", + "iopub.status.idle": "2024-09-11T12:02:17.586026Z", + "shell.execute_reply": "2024-09-11T12:02:17.585309Z" } }, "outputs": [ @@ -196,10 +196,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:11.388724Z", - "iopub.status.busy": "2024-09-11T10:59:11.388277Z", - "iopub.status.idle": "2024-09-11T10:59:11.521822Z", - "shell.execute_reply": "2024-09-11T10:59:11.521105Z" + "iopub.execute_input": "2024-09-11T12:02:17.588768Z", + "iopub.status.busy": "2024-09-11T12:02:17.588501Z", + "iopub.status.idle": "2024-09-11T12:02:17.721266Z", + "shell.execute_reply": "2024-09-11T12:02:17.720569Z" } }, "outputs": [ @@ -243,10 +243,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:11.524435Z", - "iopub.status.busy": "2024-09-11T10:59:11.524189Z", - "iopub.status.idle": "2024-09-11T10:59:11.532767Z", - "shell.execute_reply": "2024-09-11T10:59:11.532093Z" + "iopub.execute_input": "2024-09-11T12:02:17.724403Z", + "iopub.status.busy": "2024-09-11T12:02:17.723927Z", + "iopub.status.idle": "2024-09-11T12:02:17.732692Z", + "shell.execute_reply": "2024-09-11T12:02:17.731988Z" } }, "outputs": [ @@ -290,10 +290,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:11.535357Z", - "iopub.status.busy": "2024-09-11T10:59:11.534874Z", - "iopub.status.idle": "2024-09-11T10:59:11.552758Z", - "shell.execute_reply": "2024-09-11T10:59:11.552090Z" + "iopub.execute_input": "2024-09-11T12:02:17.735602Z", + "iopub.status.busy": "2024-09-11T12:02:17.735117Z", + "iopub.status.idle": "2024-09-11T12:02:17.754675Z", + "shell.execute_reply": "2024-09-11T12:02:17.753995Z" } }, "outputs": [ @@ -337,10 +337,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:11.555300Z", - "iopub.status.busy": "2024-09-11T10:59:11.554903Z", - "iopub.status.idle": "2024-09-11T10:59:11.672977Z", - "shell.execute_reply": "2024-09-11T10:59:11.672270Z" + "iopub.execute_input": "2024-09-11T12:02:17.757637Z", + "iopub.status.busy": "2024-09-11T12:02:17.757088Z", + "iopub.status.idle": "2024-09-11T12:02:17.880443Z", + "shell.execute_reply": "2024-09-11T12:02:17.879703Z" } }, "outputs": [ @@ -400,10 +400,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:11.675852Z", - "iopub.status.busy": "2024-09-11T10:59:11.675441Z", - "iopub.status.idle": "2024-09-11T10:59:11.770730Z", - "shell.execute_reply": "2024-09-11T10:59:11.770013Z" + "iopub.execute_input": "2024-09-11T12:02:17.883248Z", + "iopub.status.busy": "2024-09-11T12:02:17.883010Z", + "iopub.status.idle": "2024-09-11T12:02:17.978823Z", + "shell.execute_reply": "2024-09-11T12:02:17.978130Z" } }, "outputs": [ @@ -456,10 +456,10 @@ "execution_count": 9, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:11.773463Z", - "iopub.status.busy": "2024-09-11T10:59:11.773045Z", - "iopub.status.idle": "2024-09-11T10:59:11.847993Z", - "shell.execute_reply": "2024-09-11T10:59:11.847231Z" + "iopub.execute_input": "2024-09-11T12:02:17.981503Z", + "iopub.status.busy": "2024-09-11T12:02:17.981275Z", + "iopub.status.idle": "2024-09-11T12:02:18.056873Z", + "shell.execute_reply": "2024-09-11T12:02:18.056154Z" } }, "outputs": [ diff --git a/notebooks/nmodl-sympy-solver-cnexp.ipynb b/notebooks/nmodl-sympy-solver-cnexp.ipynb index f8d2792215..f983ee6008 100644 --- a/notebooks/nmodl-sympy-solver-cnexp.ipynb +++ b/notebooks/nmodl-sympy-solver-cnexp.ipynb @@ -62,10 +62,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:13.788129Z", - "iopub.status.busy": "2024-09-11T10:59:13.787718Z", - "iopub.status.idle": "2024-09-11T10:59:14.588204Z", - "shell.execute_reply": "2024-09-11T10:59:14.587385Z" + "iopub.execute_input": "2024-09-11T12:02:19.845221Z", + "iopub.status.busy": "2024-09-11T12:02:19.844972Z", + "iopub.status.idle": "2024-09-11T12:02:20.660093Z", + "shell.execute_reply": "2024-09-11T12:02:20.659194Z" } }, "outputs": [], @@ -79,10 +79,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:14.591114Z", - "iopub.status.busy": "2024-09-11T10:59:14.590897Z", - "iopub.status.idle": "2024-09-11T10:59:14.620801Z", - "shell.execute_reply": "2024-09-11T10:59:14.620142Z" + "iopub.execute_input": "2024-09-11T12:02:20.663416Z", + "iopub.status.busy": "2024-09-11T12:02:20.663183Z", + "iopub.status.idle": "2024-09-11T12:02:20.694551Z", + "shell.execute_reply": "2024-09-11T12:02:20.693833Z" } }, "outputs": [], @@ -123,10 +123,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:14.623522Z", - "iopub.status.busy": "2024-09-11T10:59:14.623310Z", - "iopub.status.idle": "2024-09-11T10:59:15.052777Z", - "shell.execute_reply": "2024-09-11T10:59:15.052034Z" + "iopub.execute_input": "2024-09-11T12:02:20.697733Z", + "iopub.status.busy": "2024-09-11T12:02:20.697259Z", + "iopub.status.idle": "2024-09-11T12:02:21.125530Z", + "shell.execute_reply": "2024-09-11T12:02:21.124815Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:15.055557Z", - "iopub.status.busy": "2024-09-11T10:59:15.055105Z", - "iopub.status.idle": "2024-09-11T10:59:15.166914Z", - "shell.execute_reply": "2024-09-11T10:59:15.166197Z" + "iopub.execute_input": "2024-09-11T12:02:21.128526Z", + "iopub.status.busy": "2024-09-11T12:02:21.127993Z", + "iopub.status.idle": "2024-09-11T12:02:21.240831Z", + "shell.execute_reply": "2024-09-11T12:02:21.240148Z" } }, "outputs": [ @@ -207,10 +207,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:15.169886Z", - "iopub.status.busy": "2024-09-11T10:59:15.169386Z", - "iopub.status.idle": "2024-09-11T10:59:15.370728Z", - "shell.execute_reply": "2024-09-11T10:59:15.370094Z" + "iopub.execute_input": "2024-09-11T12:02:21.243814Z", + "iopub.status.busy": "2024-09-11T12:02:21.243359Z", + "iopub.status.idle": "2024-09-11T12:02:21.446711Z", + "shell.execute_reply": "2024-09-11T12:02:21.446052Z" } }, "outputs": [ @@ -255,10 +255,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:15.373305Z", - "iopub.status.busy": "2024-09-11T10:59:15.373089Z", - "iopub.status.idle": "2024-09-11T10:59:15.532983Z", - "shell.execute_reply": "2024-09-11T10:59:15.532289Z" + "iopub.execute_input": "2024-09-11T12:02:21.449341Z", + "iopub.status.busy": "2024-09-11T12:02:21.449095Z", + "iopub.status.idle": "2024-09-11T12:02:21.610816Z", + "shell.execute_reply": "2024-09-11T12:02:21.610218Z" } }, "outputs": [ @@ -303,10 +303,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:15.535797Z", - "iopub.status.busy": "2024-09-11T10:59:15.535381Z", - "iopub.status.idle": "2024-09-11T10:59:17.316375Z", - "shell.execute_reply": "2024-09-11T10:59:17.315574Z" + "iopub.execute_input": "2024-09-11T12:02:21.613340Z", + "iopub.status.busy": "2024-09-11T12:02:21.613119Z", + "iopub.status.idle": "2024-09-11T12:02:23.428972Z", + "shell.execute_reply": "2024-09-11T12:02:23.428318Z" } }, "outputs": [ @@ -351,10 +351,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:17.319297Z", - "iopub.status.busy": "2024-09-11T10:59:17.318901Z", - "iopub.status.idle": "2024-09-11T10:59:19.567346Z", - "shell.execute_reply": "2024-09-11T10:59:19.566710Z" + "iopub.execute_input": "2024-09-11T12:02:23.431769Z", + "iopub.status.busy": "2024-09-11T12:02:23.431377Z", + "iopub.status.idle": "2024-09-11T12:02:25.683590Z", + "shell.execute_reply": "2024-09-11T12:02:25.682871Z" } }, "outputs": [ diff --git a/notebooks/nmodl-sympy-solver-derivimplicit.ipynb b/notebooks/nmodl-sympy-solver-derivimplicit.ipynb index 30ff5b9754..be90a10eea 100644 --- a/notebooks/nmodl-sympy-solver-derivimplicit.ipynb +++ b/notebooks/nmodl-sympy-solver-derivimplicit.ipynb @@ -39,10 +39,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:21.297679Z", - "iopub.status.busy": "2024-09-11T10:59:21.297118Z", - "iopub.status.idle": "2024-09-11T10:59:22.095955Z", - "shell.execute_reply": "2024-09-11T10:59:22.095152Z" + "iopub.execute_input": "2024-09-11T12:02:27.316338Z", + "iopub.status.busy": "2024-09-11T12:02:27.315830Z", + "iopub.status.idle": "2024-09-11T12:02:28.134533Z", + "shell.execute_reply": "2024-09-11T12:02:28.133746Z" } }, "outputs": [], @@ -56,10 +56,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:22.099173Z", - "iopub.status.busy": "2024-09-11T10:59:22.098753Z", - "iopub.status.idle": "2024-09-11T10:59:22.128382Z", - "shell.execute_reply": "2024-09-11T10:59:22.127557Z" + "iopub.execute_input": "2024-09-11T12:02:28.137770Z", + "iopub.status.busy": "2024-09-11T12:02:28.137339Z", + "iopub.status.idle": "2024-09-11T12:02:28.167254Z", + "shell.execute_reply": "2024-09-11T12:02:28.166601Z" } }, "outputs": [], @@ -100,10 +100,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:22.131352Z", - "iopub.status.busy": "2024-09-11T10:59:22.131016Z", - "iopub.status.idle": "2024-09-11T10:59:22.606934Z", - "shell.execute_reply": "2024-09-11T10:59:22.606192Z" + "iopub.execute_input": "2024-09-11T12:02:28.170332Z", + "iopub.status.busy": "2024-09-11T12:02:28.169866Z", + "iopub.status.idle": "2024-09-11T12:02:28.633485Z", + "shell.execute_reply": "2024-09-11T12:02:28.632742Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:22.609654Z", - "iopub.status.busy": "2024-09-11T10:59:22.609198Z", - "iopub.status.idle": "2024-09-11T10:59:22.828497Z", - "shell.execute_reply": "2024-09-11T10:59:22.827776Z" + "iopub.execute_input": "2024-09-11T12:02:28.636494Z", + "iopub.status.busy": "2024-09-11T12:02:28.636029Z", + "iopub.status.idle": "2024-09-11T12:02:28.858020Z", + "shell.execute_reply": "2024-09-11T12:02:28.857296Z" } }, "outputs": [ diff --git a/notebooks/nmodl-sympy-solver-sparse.ipynb b/notebooks/nmodl-sympy-solver-sparse.ipynb index 113621f00f..abbf3e22e6 100644 --- a/notebooks/nmodl-sympy-solver-sparse.ipynb +++ b/notebooks/nmodl-sympy-solver-sparse.ipynb @@ -39,10 +39,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:24.187594Z", - "iopub.status.busy": "2024-09-11T10:59:24.187391Z", - "iopub.status.idle": "2024-09-11T10:59:24.991562Z", - "shell.execute_reply": "2024-09-11T10:59:24.990800Z" + "iopub.execute_input": "2024-09-11T12:02:30.374922Z", + "iopub.status.busy": "2024-09-11T12:02:30.374518Z", + "iopub.status.idle": "2024-09-11T12:02:31.169519Z", + "shell.execute_reply": "2024-09-11T12:02:31.168721Z" } }, "outputs": [], @@ -56,10 +56,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:24.994862Z", - "iopub.status.busy": "2024-09-11T10:59:24.994429Z", - "iopub.status.idle": "2024-09-11T10:59:25.024348Z", - "shell.execute_reply": "2024-09-11T10:59:25.023693Z" + "iopub.execute_input": "2024-09-11T12:02:31.172751Z", + "iopub.status.busy": "2024-09-11T12:02:31.172348Z", + "iopub.status.idle": "2024-09-11T12:02:31.201475Z", + "shell.execute_reply": "2024-09-11T12:02:31.200846Z" } }, "outputs": [], @@ -100,10 +100,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:25.027265Z", - "iopub.status.busy": "2024-09-11T10:59:25.026888Z", - "iopub.status.idle": "2024-09-11T10:59:25.502893Z", - "shell.execute_reply": "2024-09-11T10:59:25.502151Z" + "iopub.execute_input": "2024-09-11T12:02:31.204447Z", + "iopub.status.busy": "2024-09-11T12:02:31.204039Z", + "iopub.status.idle": "2024-09-11T12:02:31.665259Z", + "shell.execute_reply": "2024-09-11T12:02:31.664451Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-11T10:59:25.505889Z", - "iopub.status.busy": "2024-09-11T10:59:25.505398Z", - "iopub.status.idle": "2024-09-11T10:59:25.729410Z", - "shell.execute_reply": "2024-09-11T10:59:25.728753Z" + "iopub.execute_input": "2024-09-11T12:02:31.668287Z", + "iopub.status.busy": "2024-09-11T12:02:31.667839Z", + "iopub.status.idle": "2024-09-11T12:02:31.887405Z", + "shell.execute_reply": "2024-09-11T12:02:31.886711Z" } }, "outputs": [