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Currently all tests are using primitive vectors and/or lists. Since the goal is for the parallel functions to work on anything implementing c, [, and [[, we should add tests that work on Bioconductor vector-like classes, such as IRanges, SimpleList, GRangesList, and XStringSet, etc.
Issues to be addressed:
How can we use a package in a test without making BiocParallel depend on that package?
We should benchmark to see what kind of speedup is achieved with various backends. For a big complex object like GRanges, there might be a lot of overhead from transferring data between workers, as well as the splitting and joining operations. This wouldn't be part of the normal tests though.
The text was updated successfully, but these errors were encountered:
Currently all tests are using primitive vectors and/or lists. Since the goal is for the parallel functions to work on anything implementing
c
,[
, and[[
, we should add tests that work on Bioconductor vector-like classes, such as IRanges, SimpleList, GRangesList, and XStringSet, etc.Issues to be addressed:
The text was updated successfully, but these errors were encountered: