release_2024.07.16_21-49

Disable trimming

release_2024.07.16_03-37

Fix qual string length to match TSO trim

release_2024.07.16_02-35

Add MAXINFO read trimming implementation

release_2024.06.06_18-55

Refactor (#82)

* Test reference_library.rs

* Finish refactor up until pipelines

* Finish test+refactor up to the end of fastq pipeline

* Finish bam process overview, except for align_umi_to_libraries

* Finish test/refactor on scores

* Strip out some warnings

* Test and refactor pseudoalign

* Refactor down to process_equivalence_class_to_feature_list

* Refactor and comment get_sequences

* Finish refactor of align.rs

* Finish utils.rs

* Finish bam.rs

* Change to a single debrujin graph

* Fix triage reporting structure

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Co-authored-by: hextraza <[email protected]>

release_2024.03.19_16-52

Add raw nimble scores and triage reasoning to output

release_2024.02.16_00-58

Skip SEQ when writing out

release_2024.02.16_00-49

Log and propagate orientation filter reasoning to output

release_2024.02.15_18-25

Output whole UMI if a score is recovered

release_2024.02.15_00-47

Add arbitrary BAM field and tag dumping to output, gzip results

release_2024.02.02_19-46

Update sorted_bam_reader.rs