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DESCRIPTION
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Package: geneSetVis
Title: Gene set visualization
Version: 1.0.0
Authors@R:
person(given = "KOlab",
role = c("aut", "cre"),
email = "[email protected]")
Description: Visualization of gene-sets using established packages and databases.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Depends:
R (>= 3.5.0)
biocViews:
Imports:
shiny,
AnnotationHub,
BiocGenerics,
DOSE,
DT,
ReactomePA,
biomaRt,
clusterProfiler,
dplyr,
magrittr,
enrichR,
enrichplot,
fgsea,
formattable,
ggplot2,
ggupset,
knitr,
org.Hs.eg.db,
org.Mm.eg.db,
org.Mmu.eg.db,
plotly,
shinyWidgets,
shinydashboard,
shinytest,
stringr,
tidyr,
STRINGdb,
msigdbr,
rmdformats,
tidyselect (>= 1.0.0),
shinyjs,
shinybusy,
R.devices,
readxl
Suggests:
ggvis,
devtools,
testthat (>= 2.1.0),
digest
Remotes:
bioc::STRINGdb