DESCRIPTION

Package: cellhashR
Type: Package
Title: A Package for Demultiplexing Cell Hashing Data
Version: 1.2.0
Author: Bimber Lab
Maintainer: The package maintainer <bimber@ohsu.edu>
Description: The goal of this package is to provide tools for QC and demultiplexing of cell hashing data.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends:
    R (>= 4.2.0)
Imports:
    Seurat,
    SeuratObject,
    dplyr,
    tidyr,
    naturalsort,
    Matrix (>= 1.5-3),
    ggplot2,
    forcats,
    egg,
    cluster,
    patchwork,
    scales,
    KernSmooth,
    fitdistrplus,
    grDevices,
    utils,
    stats,
    RColorBrewer,
    reshape2,
    rmarkdown,
    rmdformats,
    ggforce,
    DropletUtils,
    S4Vectors,
    preprocessCore,
    data.table,
    reticulate,
    ggExtra,
    magick,
    ggthemes,
    demuxmix,
    methods,
    SingleCellExperiment,
    magrittr
Suggests:
    devtools,
    pdftools,
    testthat (>= 2.1.0),
    knitr
RoxygenNote: 7.3.2
URL: https://github.com/BimberLab/cellhashR
BugReports: https://github.com/BimberLab/cellhashR/issues
Remotes:
    bmbolstad/preprocessCore
Config/reticulate:
  list(
    packages = list(
      list(package = "GMM_Demux"),
      list(package = "demuxEM")
    )
  )
Collate:
    'Utils.R'
    'Visualization.R'
    'Normalization.R'
    'BFF_Demux.R'
    'demuxmix.R'
    'DemuxEM.R'
    'GMM_Demux.R'
    'DropletUtils_Demux.R'
    'Threshold_Demux.R'
    'SeqND_Demux.R'
    'Seurat_HTO_Demux.R'
    'Multiseq.R'
    'CellHashing.R'
    'Preprocessing.R'
VignetteBuilder: knitr