From 7ab4e430635c6ffb8c37c6114a387e0984c91e5c Mon Sep 17 00:00:00 2001
From: bbimber <bbimber@gmail.com>
Date: Sat, 21 Dec 2024 07:09:37 -0800
Subject: [PATCH] Pre-download celltypist models in docker

---
 Dockerfile | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index d1c5123..56189df 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -10,4 +10,5 @@ RUN cd /RIRA \
 	&& Rscript -e "BiocManager::install(ask = F, upgrade = 'always');" \
 	&& Rscript -e "devtools::install_deps(pkg = '.', dependencies = TRUE, upgrade = 'always');" \
 	&& R CMD INSTALL --build *.tar.gz \
-	&& rm -Rf /tmp/downloaded_packages/ /tmp/*.rds
+	&& rm -Rf /tmp/downloaded_packages/ /tmp/*.rds \
+	&& python3 -m celltypist.command_line --update-models --quiet