From 08e2124ddd689d0eca1bc5ad193ad33d4339a2b0 Mon Sep 17 00:00:00 2001
From: bbimber <bbimber@gmail.com>
Date: Sat, 22 Feb 2025 14:46:35 -0800
Subject: [PATCH] Update package in Remotes

---
 DESCRIPTION | 3 +--
 R/scGate.R  | 1 +
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 48a4f4c..1876884 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -54,8 +54,7 @@ Suggests:
     RCurl
 Remotes:
     pengminshi/cFIT,
-    satijalab/seurat-data,
-    mojaveazure/seurat-disk,
+    SeuratData=satijalab/seurat-data,
     carmonalab/UCell,
     carmonalab/scGate
 RoxygenNote: 7.3.2
diff --git a/R/scGate.R b/R/scGate.R
index e2d8692..7ef337b 100644
--- a/R/scGate.R
+++ b/R/scGate.R
@@ -39,6 +39,7 @@ RunScGate <- function(seuratObj, model, min.cells = 30, assay = 'RNA', pos.thr =
                         neg.thr = neg.thr,
                         seed = GetSeed(),
                         ncores = ncores,
+                        keep.ranks = TRUE,
                         output.col.name = output.col.name,
                         genes.blacklist = genes.blacklist
   ))