environment.yml

name: gmscmapper
channels:
  - bioconda
  - anaconda
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - atomicwrites=1.4.0=py_0
  - biopython=1.78=py310h7f8727e_0
  - blas=1.0=mkl
  - boost-cpp=1.74.0=h75c5d50_8
  - bottleneck=1.3.5=py310ha9d4c09_0
  - bzip2=1.0.8=h7f98852_4
  - ca-certificates=2022.07.19=h06a4308_0
  - certifi=2022.6.15=py310h06a4308_0
  - diamond=2.0.13=hdcc8f71_0
  - gawk=5.1.0=h7f98852_0
  - gettext=0.21.0=hf68c758_0
  - icu=70.1=h27087fc_0
  - intel-openmp=2021.4.0=h06a4308_3561
  - ld_impl_linux-64=2.38=h1181459_1
  - libffi=3.3=he6710b0_2
  - libgcc-ng=12.1.0=h8d9b700_16
  - libgomp=12.1.0=h8d9b700_16
  - libiconv=1.16=h516909a_0
  - libidn2=2.3.3=h166bdaf_0
  - libnsl=2.0.0=h7f98852_0
  - libstdcxx-ng=12.1.0=ha89aaad_16
  - libunistring=0.9.10=h7f98852_0
  - libuuid=1.0.3=h7f8727e_2
  - libxml2=2.9.14=h22db469_4
  - libzlib=1.2.12=h166bdaf_2
  - mkl=2021.4.0=h06a4308_640
  - mkl-service=2.4.0=py310h7f8727e_0
  - mkl_fft=1.3.1=py310hd6ae3a3_0
  - mkl_random=1.2.2=py310h00e6091_0
  - mmseqs2=13.45111=pl5321hf1761c0_2
  - ncurses=6.3=h5eee18b_3
  - numexpr=2.8.3=py310hcea2de6_0
  - numpy=1.23.1=py310h1794996_0
  - numpy-base=1.23.1=py310hcba007f_0
  - openssl=1.1.1q=h7f8727e_0
  - packaging=21.3=pyhd3eb1b0_0
  - pandas=1.4.3=py310h6a678d5_0
  - perl=5.32.1=2_h7f98852_perl5
  - pip=22.1.2=py310h06a4308_0
  - pyparsing=3.0.4=pyhd3eb1b0_0
  - python=3.10.4=h12debd9_0
  - python-dateutil=2.8.2=pyhd3eb1b0_0
  - pytz=2022.1=py310h06a4308_0
  - readline=8.1.2=h7f8727e_1
  - setuptools=61.2.0=py310h06a4308_0
  - six=1.16.0=pyhd3eb1b0_1
  - sqlite=3.39.2=h5082296_0
  - tk=8.6.12=h1ccaba5_0
  - tzdata=2022a=hda174b7_0
  - wget=1.21.3=h0b77cf5_0
  - wheel=0.37.1=pyhd3eb1b0_0
  - xz=5.2.5=h7f8727e_1
  - zlib=1.2.12=h166bdaf_2
  - zstd=1.5.2=h6239696_4
  - pip:
    - pyrodigal==1.1.1
prefix: /home1/duanyq/.conda/envs/gmscmapper