README.md

AMPSphere website

tags: AMPSphere

Welcome to the AMPSphere website!

• Live website: http://ampsphere.big-data-biology.org/home.
• Backend API: http://ampsphere-api.big-data-biology.org/

Dependencies

• For the backend
  • Sqlite database -- data management
  • FastAPI -- backend API implementation
  • Sqlalchemy -- database mapping and data querying
  • Pydantic -- API data validation
  • MMseqs -- AMP search API
  • HMMER -- family search API
  • Gunicorn + Uvicorn -- running the backend
  • Nginx -- running as an intermediate server
• For the frontend
  • Vue.js ecosystems
    • VueRouter -- router across website pages
    • VueAxios -- data access from the backend
    • Quasar + Element Plus -- building the website layout
  • Plotly.js -- generating visualizations of data distribution
  • LogoJS -- generating Sequence logos for AMP families
  • helicalwheel -- generating helical wheel graphs for AMPs

Issue reporting

The website is currently a work-in-progress, not yet ready for production. Any comments/feedback will be greatly appreciated.

We receive feedback via GitHub issues and Email, but please first consider using the GitHub issues, as the problem you're facing may be also useful to other users.

Authors

Name	Email	Organization
Hui Chong	[email protected]	Research Assistant, Institute of Science and Technology for Brain-inspired Intelligence, Fudan University
Célio Dias Santos Júnior	[email protected]	Postdoc Researcher, Institute of Science and Technology for Brain-inspired Intelligence, Fudan University
Luis Pedro Coelho	[email protected]	Principle Investigator, Institute of Science and Technology for Brain-inspired Intelligence, Fudan University