.gitpod.yml

image:
  file: .gitpod.Dockerfile
tasks:
  - name: Setup R
    init: echo "Setup R"
    command: |
      pip install radian
  - name: Setup Quarto
    command: |
      export QUARTO_VERSION="1.2.262"
      sudo curl -o quarto-linux-amd64.deb -L https://github.com/quarto-dev/quarto-cli/releases/download/v${QUARTO_VERSION}/quarto-${QUARTO_VERSION}-linux-amd64.deb
      sudo apt-get install -y gdebi-core
      sudo gdebi -n quarto-linux-amd64.deb
      sudo rm quarto-linux-amd64.deb
  - name: Check Quarto
    command: /usr/local/bin/quarto check
vscode:
  extensions: # based on nf-core.nf-core-extensionpack
    - codezombiech.gitignore # Language support for .gitignore files
    # - cssho.vscode-svgviewer                 # SVG viewer
    - esbenp.prettier-vscode # Markdown/CommonMark linting and style checking for Visual Studio Code
    - eamodio.gitlens # Quickly glimpse into whom, why, and when a line or code block was changed
    - EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files
    - Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar
    - mechatroner.rainbow-csv # Highlight columns in csv files in different colors
    - oderwat.indent-rainbow # Highlight indentation level
    - streetsidesoftware.code-spell-checker # Spelling checker for source code
    - quarto.quarto
    - REditorSupport.r # R
    - Ikuyadeu.r@1.2.1:z5vr1v1bfS++U/aHLSXQ6Q==
    
github:
  prebuilds:
    # enable for the default branch (defaults to true)
    master: true
    # enable for all branches in this repo (defaults to false)
    branches: false
    # enable for pull requests coming from this repo (defaults to true)
    pullRequests: true
    # enable for pull requests coming from forks (defaults to false)
    pullRequestsFromForks: true
    # add a check to pull requests (defaults to true)
    addCheck: true
    # add a "Review in Gitpod" button as a comment to pull requests (defaults to false)
    addComment: false
    # add a "Review in Gitpod" button to the pull request's description (defaults to false)
    addBadge: true