(*
diff --git a/Docs/developer_guide/extensions.md b/Docs/developer_guide/extensions.md
index c165e669eca..6b6c3ef5753 100644
--- a/Docs/developer_guide/extensions.md
+++ b/Docs/developer_guide/extensions.md
@@ -537,7 +537,7 @@ The issue is that the your extension has a "non standard" layout and the wizard
Similar issue has been discussed and reported for the "SPHARM-PDM" or UKF extension.
-First half of the solution would be to move the metadata from Common.cmake to CMakeLists.txt as it is done in [here](http://www.nitrc.org/plugins/scmsvn/viewcvs.php?view=rev&root=spharm-pdm&revision=228). Then, you could make sure there is a project() statement by following what is suggested [here](http://www.na-mic.org/Bug/view.php?id=3737#c12081).
+First half of the solution would be to move the metadata from Common.cmake to CMakeLists.txt as it is done in [here](http://www.nitrc.org/plugins/scmsvn/viewcvs.php?view=rev&root=spharm-pdm&revision=228). Then, you could make sure there is a project() statement by following what is suggested [here](https://www.na-mic.org/Bug/view.php?id=3737#c12081).
If you prefer not to re-organize your extension, you could still contribute extension description file by creating it manually.
diff --git a/Docs/user_guide/modules/colors.md b/Docs/user_guide/modules/colors.md
index e0230f993bc..400ef425d65 100644
--- a/Docs/user_guide/modules/colors.md
+++ b/Docs/user_guide/modules/colors.md
@@ -192,7 +192,7 @@ See examples and other developer information in [Developer guide](../../develope
## Acknowledgements
-This work is part of the [National Alliance for Medical Image Computing](http://www.na-mic.org/) (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
+This work is part of the [National Alliance for Medical Image Computing](https://www.na-mic.org/) (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
diff --git a/Docs/user_guide/modules/data.md b/Docs/user_guide/modules/data.md
index eb52897cdeb..601fb8c1668 100644
--- a/Docs/user_guide/modules/data.md
+++ b/Docs/user_guide/modules/data.md
@@ -111,7 +111,7 @@ List of all nodes in the scene. Supports Edit properties, Rename, Delete.
## Tutorials
-- 2016: [This tutorial](http://www.na-mic.org/Wiki/index.php/Winter2016TutorialContest) demonstrates the basic usage and potential of Slicer’s data manager module Subject Hierarchy using a two-timepoint radiotherapy phantom dataset.
+- 2016: [This tutorial](https://www.na-mic.org/Wiki/index.php/Winter2016TutorialContest) demonstrates the basic usage and potential of Slicer’s data manager module Subject Hierarchy using a two-timepoint radiotherapy phantom dataset.
- 2015: Tutorial about [loading and viewing data](https://www.slicer.org/wiki/Documentation/4.5/Training).
## Information for developers
diff --git a/Docs/user_guide/modules/dicom.md b/Docs/user_guide/modules/dicom.md
index 5e1c4161b40..a2dbd61d703 100644
--- a/Docs/user_guide/modules/dicom.md
+++ b/Docs/user_guide/modules/dicom.md
@@ -262,7 +262,7 @@ Authors:
## Acknowledgements
-This work is part of the [National Alliance for Medical Image Computing](http://www.na-mic.org/) (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149, and by Quantitative Image Informatics for Cancer Research (QIICR) (U24 CA180918).
+This work is part of the [National Alliance for Medical Image Computing](https://www.na-mic.org/) (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149, and by Quantitative Image Informatics for Cancer Research (QIICR) (U24 CA180918).
diff --git a/Docs/user_guide/modules/dwiconvert.md b/Docs/user_guide/modules/dwiconvert.md
index e1daa6c9dc6..deaa466f9d0 100644
--- a/Docs/user_guide/modules/dwiconvert.md
+++ b/Docs/user_guide/modules/dwiconvert.md
@@ -19,5 +19,5 @@
## Information for Developers
-- [DICOM for DWI and DTI](http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:DICOM_for_DWI_and_DTI)
+- [DICOM for DWI and DTI](https://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:DICOM_for_DWI_and_DTI)
- [Source code on github](https://github.com/BRAINSia/BRAINSTools)
diff --git a/Docs/user_guide/modules/endoscopy.md b/Docs/user_guide/modules/endoscopy.md
index 931298e4285..6ebcf14c026 100644
--- a/Docs/user_guide/modules/endoscopy.md
+++ b/Docs/user_guide/modules/endoscopy.md
@@ -30,4 +30,4 @@ Steve Pieper (Isomics), Jean-Christophe Fillion-Robin (Kitware)
## Acknowledgements
-This work is supported by PAR-07-249: R01CA131718 NA-MIC Virtual Colonoscopy (See http://www.na-mic.org/Wiki/index.php/NA-MIC_NCBC_Collaboration:NA-MIC_virtual_colonoscopy) NA-MIC, NAC, BIRN, NCIGT, and the Slicer Community. See https://www.slicer.org for details. Module implemented by Steve Pieper.
+This work is supported by PAR-07-249: R01CA131718 NA-MIC Virtual Colonoscopy (See https://www.na-mic.org/Wiki/index.php/NA-MIC_NCBC_Collaboration:NA-MIC_virtual_colonoscopy) NA-MIC, NAC, BIRN, NCIGT, and the Slicer Community. See https://www.slicer.org for details. Module implemented by Steve Pieper.
diff --git a/Docs/user_guide/modules/markups.md b/Docs/user_guide/modules/markups.md
index cff7a94c983..634c792ffd9 100644
--- a/Docs/user_guide/modules/markups.md
+++ b/Docs/user_guide/modules/markups.md
@@ -181,7 +181,7 @@ Authors:
## Acknowledgements
-This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [NA-MIC website](http://www.na-mic.org/).
+This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [NA-MIC website](https://www.na-mic.org/).
diff --git a/Docs/user_guide/modules/segmenteditor.md b/Docs/user_guide/modules/segmenteditor.md
index 93b0ce05b31..05dc6a74b7e 100644
--- a/Docs/user_guide/modules/segmenteditor.md
+++ b/Docs/user_guide/modules/segmenteditor.md
@@ -285,7 +285,7 @@ Authors:
## Acknowledgements
This module is partly funded by an Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.
-The work is part of the [National Alliance for Medical Image Computing](http://www.na-mic.org/) (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
+The work is part of the [National Alliance for Medical Image Computing](https://www.na-mic.org/) (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
diff --git a/Docs/user_guide/modules/segmentstatistics.md b/Docs/user_guide/modules/segmentstatistics.md
index 9face0a8e3b..5514e25b770 100644
--- a/Docs/user_guide/modules/segmentstatistics.md
+++ b/Docs/user_guide/modules/segmentstatistics.md
@@ -58,7 +58,7 @@ Authors:
## Acknowledgements
This module is partly funded by an Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.
-The work is part of the [National Alliance for Medical Image Computing](http://www.na-mic.org/) (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
+The work is part of the [National Alliance for Medical Image Computing](https://www.na-mic.org/) (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
diff --git a/Libs/MRML/Core/vtkEventBroker.h b/Libs/MRML/Core/vtkEventBroker.h
index cd71c4d2200..ace17b18042 100644
--- a/Libs/MRML/Core/vtkEventBroker.h
+++ b/Libs/MRML/Core/vtkEventBroker.h
@@ -39,7 +39,7 @@ class vtkObservation;
/// It caches tags returned by AddObserver method so that observers can be
/// removed properly.
/// See also:
-/// http://wiki.na-mic.org/Wiki/index.php/Slicer3:EventBroker
+/// https://wiki.na-mic.org/Wiki/index.php/Slicer3:EventBroker
/// http://en.wikipedia.org/wiki/Observer_pattern
//
/// Other interesting observer implementations:
diff --git a/Libs/MRML/Core/vtkMRMLNRRDStorageNode.cxx b/Libs/MRML/Core/vtkMRMLNRRDStorageNode.cxx
index 257252cb09d..ca60ee38011 100644
--- a/Libs/MRML/Core/vtkMRMLNRRDStorageNode.cxx
+++ b/Libs/MRML/Core/vtkMRMLNRRDStorageNode.cxx
@@ -555,7 +555,7 @@ int vtkMRMLNRRDStorageNode::ParseDiffusionInformation(
cur_grad.copy_in(tmp_grads->GetTuple3(i));
// note: this is norm^2, per the NA-MIC NRRD DWI convention
- // http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format
+ // https://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format
double cur_bval = ref_bvalue * pow(cur_grad.two_norm() / max_grad_norm, 2);
bvalues_array->SetValue(i, cur_bval);
diff --git a/Modules/CLI/FiducialRegistration/Testing/CMakeLists.txt b/Modules/CLI/FiducialRegistration/Testing/CMakeLists.txt
index ffdec5cad2c..79da011edef 100644
--- a/Modules/CLI/FiducialRegistration/Testing/CMakeLists.txt
+++ b/Modules/CLI/FiducialRegistration/Testing/CMakeLists.txt
@@ -1,4 +1,4 @@
-# See http://www.na-mic.org/Bug/view.php?id=3340
+# See https://www.na-mic.org/Bug/view.php?id=3340
# message(WARNING "warning: Module ${MODULE_NAME} doesn't have any test !")
#-----------------------------------------------------------------------------
diff --git a/Modules/CLI/ProbeVolumeWithModel/Testing/CMakeLists.txt b/Modules/CLI/ProbeVolumeWithModel/Testing/CMakeLists.txt
index b6990d1d3a3..8ce877d60f2 100644
--- a/Modules/CLI/ProbeVolumeWithModel/Testing/CMakeLists.txt
+++ b/Modules/CLI/ProbeVolumeWithModel/Testing/CMakeLists.txt
@@ -1,4 +1,4 @@
-# See http://www.na-mic.org/Bug/view.php?id=3334
+# See https://www.na-mic.org/Bug/view.php?id=3334
# message(WARNING "warning: Module ${MODULE_NAME} doesn't have any test !")
#-----------------------------------------------------------------------------
diff --git a/Modules/Loadable/SlicerWelcome/Resources/HTML/Acknowledgment.html b/Modules/Loadable/SlicerWelcome/Resources/HTML/Acknowledgment.html
index 6cc6edc5daf..794a3d6104f 100644
--- a/Modules/Loadable/SlicerWelcome/Resources/HTML/Acknowledgment.html
+++ b/Modules/Loadable/SlicerWelcome/Resources/HTML/Acknowledgment.html
@@ -8,7 +8,7 @@
-
+
|
@@ -30,7 +30,7 @@
- Development of 3D Slicer is supported by NA-MIC, NAC, NCIGT, SPL and the Slicer Community. See https://www.slicer.org for details.
+
Development of 3D Slicer is supported by NA-MIC, NAC, NCIGT, SPL and the Slicer Community. See https://www.slicer.org for details.
We would also like to express our sincere thanks to members of the Slicer User Community who have helped us to design the contents of this Welcome Module, and whose feedback continues to improve functionality, usability and Slicer user experience.
diff --git a/Modules/Loadable/SlicerWelcome/Resources/HTML/Feedback.html b/Modules/Loadable/SlicerWelcome/Resources/HTML/Feedback.html
index bfd613370b9..bf36f1a9872 100644
--- a/Modules/Loadable/SlicerWelcome/Resources/HTML/Feedback.html
+++ b/Modules/Loadable/SlicerWelcome/Resources/HTML/Feedback.html
@@ -8,7 +8,7 @@
-
+
|
diff --git a/Modules/Loadable/SubjectHierarchy/Testing/Python/SubjectHierarchyGenericSelfTest.py b/Modules/Loadable/SubjectHierarchy/Testing/Python/SubjectHierarchyGenericSelfTest.py
index 56cf90cfadb..28e6714f63a 100644
--- a/Modules/Loadable/SubjectHierarchy/Testing/Python/SubjectHierarchyGenericSelfTest.py
+++ b/Modules/Loadable/SubjectHierarchy/Testing/Python/SubjectHierarchyGenericSelfTest.py
@@ -658,7 +658,7 @@ def createSampleModelNode(self, name, color, volumeNode=None):
radius = 50
x = y = z = 0
- # Taken from: http://www.na-mic.org/Bug/view.php?id=1536
+ # Taken from: https://www.na-mic.org/Bug/view.php?id=1536
sphere = vtk.vtkSphereSource()
sphere.SetCenter(x, y, z)
sphere.SetRadius(radius)
diff --git a/Modules/Scripted/DICOMLib/DICOMBrowser.py b/Modules/Scripted/DICOMLib/DICOMBrowser.py
index 23c742c9a42..1bcf6e276fa 100644
--- a/Modules/Scripted/DICOMLib/DICOMBrowser.py
+++ b/Modules/Scripted/DICOMLib/DICOMBrowser.py
@@ -244,7 +244,7 @@ def checkForExtensions(self):
then return matches
See
- http://www.na-mic.org/Bug/view.php?id=4146
+ https://www.na-mic.org/Bug/view.php?id=4146
"""
# 1 - load json
diff --git a/Modules/Scripted/Endoscopy/Endoscopy.py b/Modules/Scripted/Endoscopy/Endoscopy.py
index 97735474dc1..da5ed12c1c4 100644
--- a/Modules/Scripted/Endoscopy/Endoscopy.py
+++ b/Modules/Scripted/Endoscopy/Endoscopy.py
@@ -34,7 +34,7 @@ def __init__(self, parent):
self.parent.helpText += self.getDefaultModuleDocumentationLink()
self.parent.acknowledgementText = """
This work is supported by PAR-07-249: R01CA131718 NA-MIC Virtual Colonoscopy
-(See http://www.na-mic.org/Wiki/index.php/NA-MIC_NCBC_Collaboration:NA-MIC_virtual_colonoscopy)
+(See https://www.na-mic.org/Wiki/index.php/NA-MIC_NCBC_Collaboration:NA-MIC_virtual_colonoscopy)
NA-MIC, NAC, BIRN, NCIGT, and the Slicer Community.
"""
diff --git a/Modules/Scripted/SelfTests/SelfTests.py b/Modules/Scripted/SelfTests/SelfTests.py
index 1ccf9271305..1d4cd8c33a0 100644
--- a/Modules/Scripted/SelfTests/SelfTests.py
+++ b/Modules/Scripted/SelfTests/SelfTests.py
@@ -11,7 +11,7 @@
#
# This code includes the GUI for the slicer module.
# The purpose is to provide a BIST (http://en.wikipedia.org/wiki/Built-in_self-test)
-# framework for slicer as discussed here: http://na-mic.org/Bug/view.php?id=1922
+# framework for slicer as discussed here: https://na-mic.org/Bug/view.php?id=1922
#
diff --git a/SuperBuild.cmake b/SuperBuild.cmake
index 2a149af8358..c12c6015d86 100644
--- a/SuperBuild.cmake
+++ b/SuperBuild.cmake
@@ -43,7 +43,7 @@ if(EP_GIT_PROTOCOL STREQUAL "https")
"adding 'git config' statement between the 'git checkout' and the 'submodule init', it is required "
"to manually update your global git config to successfully build ${CMAKE_PROJECT_NAME} with "
"option Slicer_USE_GIT_PROTOCOL set to FALSE. "
-"See http://na-mic.org/Mantis/view.php?id=2731"
+"See https://na-mic.org/Mantis/view.php?id=2731"
"\nYou could do so by running the command:\n"
" ${GIT_EXECUTABLE} config --global url.${base}.insteadOf ${insteadof}\n")
endif()
diff --git a/Utilities/Scripts/SEMToMediaWiki.py b/Utilities/Scripts/SEMToMediaWiki.py
index cd25dc5a20a..4077f5e4798 100644
--- a/Utilities/Scripts/SEMToMediaWiki.py
+++ b/Utilities/Scripts/SEMToMediaWiki.py
@@ -246,11 +246,11 @@ def DumpSEMMediaWikiFooter(executableNode):
Links to known bugs in the Slicer3 bug tracker
-* [http://www.na-mic.org/Bug/view.php?id=000 Bug 000:description]
+* [https://www.na-mic.org/Bug/view.php?id=000 Bug 000:description]
===Usability issues===
-Follow this [http://na-mic.org/Mantis/main_page.php link] to
+Follow this [https://na-mic.org/Mantis/main_page.php link] to
the Slicer3 bug tracker. Please select the '''usabilityissue category''' when browsing or contributing.
===Source code & documentation===
@@ -262,7 +262,7 @@ def DumpSEMMediaWikiFooter(executableNode):
*[http://viewvc.slicer.org/viewcvs.cgi/trunk file.h ]
Doxygen documentation:
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classes.html class1]
+*[https://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classes.html class1]
== More Information ==