New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Determine if a SNP is kept in the autoencoder when used for prediction #49

Open

richelbilderbeek opened this issue May 20, 2022 · 0 comments

Contributor

richelbilderbeek commented May 20, 2022

A SNP is compressed correctly if

when it is only used for autoencoding: when common
when it is used in phenotypic prediction: when relevant for prediction

Determine which SNPs are kept in.

Then, answer the question: if a SNP is rare, but useful for prediction, is it kept in?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment