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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(calc_mse_from_identity_line)
export(calc_nmse_from_identity_line)
export(calc_nmse_from_phenotype_predictions)
export(calc_r_squared)
export(calc_r_squared_from_phenotype_predictions)
export(check_analyse_epochs)
export(check_csv_filename)
export(check_data)
export(check_data_opts_id)
export(check_datadir)
export(check_epoch)
export(check_epochs)
export(check_evaluate_results)
export(check_file_extension)
export(check_folder_name)
export(check_gcae_args)
export(check_gcae_experiment_params)
export(check_gcae_experiment_params_filename)
export(check_gcae_experiment_results)
export(check_gcae_folder)
export(check_gcae_input_data)
export(check_gcae_input_data_data_type)
export(check_gcae_input_filenames)
export(check_gcae_input_files)
export(check_gcae_is_installed)
export(check_gcae_options)
export(check_gcae_options_filename)
export(check_gcae_python_packages_are_installed)
export(check_gcae_repo_is_cloned)
export(check_gcae_script_is_fixed)
export(check_gcae_setup)
export(check_gcae_setup_filename)
export(check_gcae_train_files_are_present)
export(check_gcae_version)
export(check_genotype_concordances_table)
export(check_gif_filename)
export(check_input_files_are_present)
export(check_labels_table)
export(check_losses_from_train_t_table)
export(check_losses_from_train_v_table)
export(check_metric)
export(check_metrics)
export(check_model)
export(check_model_filename)
export(check_model_id)
export(check_n_neurons)
export(check_nmse_in_time_table)
export(check_ormr_folder_name)
export(check_pheno_model_filename)
export(check_pheno_model_id)
export(check_phenotype_predictions_table)
export(check_png_filename)
export(check_python_version)
export(check_r_squared_in_time_table)
export(check_resume_from)
export(check_save_interval)
export(check_score_per_pop_table)
export(check_scores_table)
export(check_superpops)
export(check_train_opts_id)
export(check_train_times_table)
export(check_trainedmodeldir)
export(check_trainedmodelname)
export(clean_file_path)
export(clean_gcaer_tempfolder)
export(clone_gcae_repo)
export(create_gcae_evaluate_args)
export(create_gcae_experiment_params)
export(create_gcae_input_data)
export(create_gcae_input_filenames)
export(create_gcae_input_files_1)
export(create_gcae_input_files_2)
export(create_gcae_options)
export(create_gcae_project_args)
export(create_gcae_setup)
export(create_gcae_train_args)
export(create_gcae_train_more_args)
export(create_genotype_concordances_through_time_png)
export(create_losses_from_train_t_through_time_png)
export(create_losses_from_train_v_through_time_png)
export(create_nmse_through_time_png)
export(create_phenotype_prediction_quality_png)
export(create_phenotype_prediction_through_time_gif)
export(create_phenotype_predictions_through_time_png)
export(create_plots_from_gcae_experiment_results)
export(create_r_squared_through_time_png)
export(create_score_per_pop_through_time_png)
export(create_scores_through_time_png)
export(create_test_gcae_experiment_params)
export(create_test_gcae_experiment_results)
export(create_test_gcae_input_data)
export(create_test_gcae_input_filenames)
export(create_test_gcae_setup)
export(create_test_genotype_concordances_table)
export(create_test_losses_from_train_t_table)
export(create_test_losses_from_train_v_table)
export(create_test_model)
export(create_test_nmse_in_time_table)
export(create_test_phenotype_predictions_table)
export(create_test_r_squared_in_time_table)
export(create_test_score_per_pop_table)
export(create_test_scores_table)
export(create_test_train_times_table)
export(create_train_times_through_time_png)
export(do_gcae_experiment)
export(evaluate_phenotype_prediction)
export(fix_gcae_script)
export(gcae_animate)
export(gcae_evaluate)
export(gcae_options_to_str)
export(gcae_plot)
export(gcae_project)
export(gcae_setup_to_str)
export(gcae_train)
export(gcae_train_more)
export(gcaer_report)
export(get_default_github_repo_branch_name)
export(get_default_github_repo_url)
export(get_default_ormr_folder_name)
export(get_gcae_data_opts_filename)
export(get_gcae_data_opts_filenames)
export(get_gcae_data_opts_ids)
export(get_gcae_example_filename)
export(get_gcae_example_filenames)
export(get_gcae_experiment_results_filenames)
export(get_gcae_folder)
export(get_gcae_help_text)
export(get_gcae_input_filenames)
export(get_gcae_model_filename)
export(get_gcae_model_filenames)
export(get_gcae_model_ids)
export(get_gcae_output_subfolder)
export(get_gcae_pheno_model_filename)
export(get_gcae_pheno_model_filenames)
export(get_gcae_pheno_model_ids)
export(get_gcae_required_python_packages)
export(get_gcae_train_opts_filename)
export(get_gcae_train_opts_filenames)
export(get_gcae_train_opts_ids)
export(get_gcae_trainedmodelname)
export(get_gcae_version)
export(get_gcaer_filename)
export(get_gcaer_filenames)
export(get_gcaer_folder)
export(get_gcaer_tempfilename)
export(get_gcaer_theme)
export(get_n_neurons_in_latent_layer)
export(get_n_neurons_in_latent_layer_from_gcae_experiment_params)
export(get_n_neurons_in_latent_layer_from_model)
export(get_run_gcae_py_path)
export(get_test_data)
export(get_test_datadir)
export(get_test_labels_table)
export(has_cloned_gcae_repo)
export(install_gcae)
export(install_gcae_requirements)
export(is_equal_json)
export(is_gcae_experiment_params)
export(is_gcae_installed)
export(is_gcae_repo_cloned)
export(is_gcae_script_fixed)
export(is_model)
export(is_tensorboard_installed)
export(normalize_true_and_estimated_values)
export(parse_evaluate_filenames)
export(parse_genotype_concordances_file)
export(parse_losses_from_project_file)
export(parse_losses_from_train_t_file)
export(parse_losses_from_train_v_file)
export(parse_project_files)
export(parse_score_per_pop_file)
export(parse_train_filenames)
export(parse_train_times_file)
export(plot_genotype_concordances_from_file)
export(plot_losses_from_train_t_from_file)
export(plot_losses_from_train_v_from_file)
export(plot_model)
export(plot_nmse_in_time_from_file)
export(plot_phenotype_predictions_from_file)
export(plot_r_squared_in_time_from_file)
export(plot_score_per_pop_from_file)
export(plot_scores_from_file)
export(plot_train_times_from_file)
export(project)
export(read_gcae_experiment_params_file)
export(read_gcae_input_files)
export(read_gcae_options_file)
export(read_gcae_setup_file)
export(read_genotype_concordances_file)
export(read_labels_file)
export(read_losses_from_train_t_file)
export(read_losses_from_train_v_file)
export(read_model_file)
export(read_nmse_in_time_file)
export(read_pheno_model_file)
export(read_phenotype_predictions_file)
export(read_r_squared_in_time_file)
export(read_score_per_pop_file)
export(read_scores_file)
export(read_train_times_file)
export(remove_gcaer_tempfolder)
export(rename_files)
export(resize_to_shared_individuals_from_data)
export(resize_to_shared_individuals_from_files)
export(run_gcae)
export(run_tensorboard)
export(save_gcae_experiment_params)
export(save_gcae_experiment_results)
export(save_gcae_input_data)
export(save_gcae_options)
export(save_gcae_setup)
export(save_labels_table)
export(save_model)
export(save_model_plot)
export(set_n_neurons_in_latent_layer)
export(summarise_gcae_input_data)
export(summarise_gcae_input_files)
export(uninstall_gcae)