From 10990635a5f429718136b90b31d9dbd1f6807e68 Mon Sep 17 00:00:00 2001 From: Spencer Wong Date: Thu, 6 Feb 2025 09:51:53 +1100 Subject: [PATCH] Update module versions and filepaths listed --- docs/models/run-a-model/run-access-esm.md | 21 +++++++++------------ 1 file changed, 9 insertions(+), 12 deletions(-) diff --git a/docs/models/run-a-model/run-access-esm.md b/docs/models/run-a-model/run-access-esm.md index 7cd60a063..8654123bb 100644 --- a/docs/models/run-a-model/run-access-esm.md +++ b/docs/models/run-a-model/run-access-esm.md @@ -56,11 +56,11 @@ Before running {{ model }}, you need to [Set Up your NCI Account](/getting_start payu --version - 1.1.5 + payu 1.1.6 !!! warning - _payu_ version >=1.1.5 is required + _payu_ version >=1.1.6 is required ---------------------------------------------------------------------------------------- @@ -154,7 +154,7 @@ This will submit a single job to the queue with a run length given by [`runtime` Loading exe manifest: manifests/exe.yaml payu: Found modules in /opt/Modules/v4.3.0 - qsub -q normal -P tm70 -l walltime=9000 -l ncpus=384 -l mem=1536GB -N pre-industrial -l wd -j n -v PAYU_PATH=/g/data/vk83/apps/payu/1.1.4/bin,MODULESHOME=/opt/Modules/v4.3.0,MODULES_CMD=/opt/Modules/v4.3.0/libexec/modulecmd.tcl,MODULEPATH=/g/data/vk83/modules:/etc/scl/modulefiles:/apps/Modules/restricted-modulefiles/matlab_monash:/opt/Modules/modulefiles:/opt/Modules/v4.3.0/modulefiles:/apps/Modules/modulefiles -W umask=027 -l storage=gdata/vk83 -- /g/data/vk83/apps/payu/1.1.4/bin/python3.10 /g/data/vk83/apps/payu/1.1.4/bin/payu-run + qsub -q normal -P tm70 -l walltime=9000 -l ncpus=432 -l mem=1728GB -l jobfs=1500MB -N pre-industrial -l wd -j n -v PAYU_PATH=/g/data/vk83/apps/base_conda/envs/payu-1.1.6/bin,MODULESHOME=/opt/Modules/v4.3.0,MODULES_CMD=/opt/Modules/v4.3.0/libexec/modulecmd.tcl,MODULEPATH=/g/data/vk83/modules:/etc/scl/modulefiles:/apps/Modules/restricted-modulefiles/matlab_monash:/opt/Modules/modulefiles:/opt/Modules/v4.3.0/modulefiles:/apps/Modules/modulefiles -W umask=027 -l storage=gdata/vk83 -- /g/data/vk83/./apps/conda_scripts/payu-1.1.6.d/bin/python /g/data/vk83/apps/base_conda/envs/payu-1.1.6/bin/payu-run <job-ID>.gadi-pbs> @@ -261,8 +261,8 @@ This command will: archive path: /scratch/$PROJECT/$USER/access-esm/archive Found experiment archive: /scratch/$PROJECT/$USER/access-esm/archive/preindustrial+concentrations-expt-0635396b payu: Found modules in /opt/Modules/v4.3.0 - Loading access-esm1p5/2024.05.0 - Loading requirement: cice4/2024.05.21 mom5/access-esm1.5_2024.06.20 um7/2024.07.03 + Loading access-esm1p5/2024.12.0 + Loading requirement: cice4/2024.05.21-izhg4i3 mom5/access-esm1.5_2024.08.23-m5h4mmw um7/2024.10.17-l3w5m5u Loading input manifest: manifests/input.yaml Loading restart manifest: manifests/restart.yaml Loading exe manifest: manifests/exe.yaml @@ -272,9 +272,6 @@ This command will: Setting up ice Setting up coupler Checking exe and input manifests - Creating restart manifest - Updating full hashes for 29 files in manifests/restart.yaml - Writing manifests/restart.yaml This can help to isolate issues such as permissions problems accessing files and directories, missing files or malformed/incorrect paths. @@ -483,7 +480,7 @@ Each submodel contains additional configuration options that are read in when th submodels: - name: atmosphere model: um - ncpus: 192 + ncpus: 240 exe: um_hg3.exe input: # Aerosols @@ -512,7 +509,7 @@ Each submodel contains additional configuration options that are read in when th - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/grids/global.N96/2020.05.19/qrparm.mask - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/grids/resolution_independent/2020.05.19/vertlevs_G3 # STASH - - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2020.05.19/ + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2024.11.01 - name: ocean model: mom @@ -523,8 +520,6 @@ Each submodel contains additional configuration options that are read in when th - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/dust.nc - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_press_monthly_om1p5_bc.nc - /g/data/vk83/configurations/inputs/access-esm1p5/share/ocean/biogeochemistry/global.1deg/2024.07.12/bgc_param.nc - - /g/data/vk83/configurations/inputs/access-esm1p5/modern/unused/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_fice_monthly_om1p5_bc.nc - - /g/data/vk83/configurations/inputs/access-esm1p5/modern/unused/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_xkw_monthly_om1p5_bc.nc # Tides - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/roughness_amp.nc - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/tideamp.nc @@ -532,6 +527,8 @@ Each submodel contains additional configuration options that are read in when th - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/shortwave_penetration/global.1deg/2020.05.19/ssw_atten_depth.nc # Grids - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/grids/mosaic/global.1deg/2020.05.19/grid_spec.nc + # Basin mask + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/basins/global.1deg/2020.05.19/basin_mask.nc - name: ice model: cice