Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

em-picker does not open #14

Open
azazellochg opened this issue Apr 26, 2020 · 1 comment
Open

em-picker does not open #14

azazellochg opened this issue Apr 26, 2020 · 1 comment

Comments

@azazellochg
Copy link

I installed everything with:

  conda create -n emvis python=3.8
  conda activate emvis
  conda install emvis -c conda-forge -c emforge
  pip install datavis

I cant start a picker:

(emvis) [azazello@xps13-9350 micrographs]$ em-picker 006.mrc 
Traceback (most recent call last):
  File "/home/azazello/.conda/envs/emvis/bin/em-picker", line 10, in <module>
    sys.exit(picker())
  File "/home/azazello/.conda/envs/emvis/lib/python3.8/site-packages/emvis/apps/picker.py", line 125, in main
    dv.views.showView(_createView, title="EM-PICKER")
  File "/home/azazello/.conda/envs/emvis/lib/python3.8/site-packages/datavis/views/_utils.py", line 69, in showView
    win = ViewWindow(createViewFunc(), title=title,
  File "/home/azazello/.conda/envs/emvis/lib/python3.8/site-packages/emvis/apps/picker.py", line 123, in _createView
    return dv.views.PickerView(model, **kwargs)
  File "/home/azazello/.conda/envs/emvis/lib/python3.8/site-packages/datavis/views/picker_view.py", line 87, in __init__
    self.__setupGUI(**kwargs)
  File "/home/azazello/.conda/envs/emvis/lib/python3.8/site-packages/datavis/views/picker_view.py", line 134, in __setupGUI
    self.__addMicrographsAction(imgViewToolBar, **kwargs)
  File "/home/azazello/.conda/envs/emvis/lib/python3.8/site-packages/datavis/views/picker_view.py", line 184, in __addMicrographsAction
    cvImages = ColumnsView(self._model, **kwargs)
  File "/home/azazello/.conda/envs/emvis/lib/python3.8/site-packages/datavis/views/_columns.py", line 53, in __init__
    self.setModel(model=model,
  File "/home/azazello/.conda/envs/emvis/lib/python3.8/site-packages/datavis/views/_columns.py", line 341, in setModel
    raise Exception('Invalid model: None')
Exception: Invalid model: None
Segmentation fault (core dumped)
@azazellochg
Copy link
Author

I also tried the following:

  conda create -n emvis python=3.8
  conda activate emvis
  pip install emcore
  pip install -e datavis
  pip install -e emvis

And got the following:

Traceback (most recent call last):
  File "/home/azazello/.conda/envs/emvis/bin/em-picker", line 11, in <module>
    load_entry_point('emvis', 'console_scripts', 'em-picker')()
  File "/home/azazello/.local/lib/python3.8/site-packages/pkg_resources/__init__.py", line 490, in load_entry_point
    return get_distribution(dist).load_entry_point(group, name)
  File "/home/azazello/.local/lib/python3.8/site-packages/pkg_resources/__init__.py", line 2859, in load_entry_point
    return ep.load()
  File "/home/azazello/.local/lib/python3.8/site-packages/pkg_resources/__init__.py", line 2450, in load
    return self.resolve()
  File "/home/azazello/.local/lib/python3.8/site-packages/pkg_resources/__init__.py", line 2456, in resolve
    module = __import__(self.module_name, fromlist=['__name__'], level=0)
  File "/home/azazello/soft/em-stuff/emvis/emvis/__init__.py", line 8, in <module>
    from . import utils
  File "/home/azazello/soft/em-stuff/emvis/emvis/utils/__init__.py", line 5, in <module>
    from ._image_manager import ImageManager, ImageRef
  File "/home/azazello/soft/em-stuff/emvis/emvis/utils/_image_manager.py", line 8, in <module>
    from datavis.utils import py23
ImportError: cannot import name 'py23' from 'datavis.utils' (/home/azazello/soft/em-stuff/datavis/datavis/utils/__init__.py)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant